RNA id: TU101769


Basic Information

Item Value
RNA id TU101769
length 233
lncRNA type intronic
GC content 0.49
exon number 1
gene id G81586
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35102352 ~ 35102584 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggacggtgaaagctaagtgctgtcaagatgtagggttacagacaagggctacgtgAAAGGgtgcaaggaggaaaacaatcaagaacgcgaggagcataataagctgaagtgctatctagcagggatagaggactaatattacaagtgctgtcggaagagatgcgtcttgagtaagcgccggaatgaggtcaaggactctgctgttttgacttcggtgggcaggtcgttccatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101766 lncRNA upstream 51740 35050405 ~ 35050612 (+) True G81583
TU101765 lncRNA upstream 62885 35039257 ~ 35039467 (+) True G81582
TU101764 lncRNA upstream 85220 35016909 ~ 35017132 (+) True G81581
TU101763 lncRNA upstream 86018 35016075 ~ 35016334 (+) True G81580
TU101760 lncRNA upstream 88698 35012955 ~ 35013654 (+) True G81577
TU101845 lncRNA downstream 378216 35480800 ~ 35526188 (+) True AMCG00010563
TU101882 lncRNA downstream 559579 35662163 ~ 35666680 (+) True G81675
TU101918 lncRNA downstream 600105 35702689 ~ 35703798 (+) True G81707
TU101920 lncRNA downstream 601615 35704199 ~ 35704527 (+) False G81707
TU101923 lncRNA downstream 604933 35707517 ~ 35713953 (+) True G81710
AMCG00010548 mRNA upstream 98464 34962348 ~ 35003888 (+) True AMCG00010548
AMCG00010550 mRNA upstream 171197 34930547 ~ 34931155 (+) True AMCG00010550
AMCG00010547 mRNA upstream 197990 34903503 ~ 34904362 (+) True AMCG00010547
AMCG00010546 mRNA upstream 244831 34847908 ~ 34857521 (+) True AMCG00010546
AMCG00010545 mRNA upstream 257501 34798087 ~ 34844851 (+) True AMCG00010545
AMCG00010552 mRNA downstream 19030 35121614 ~ 35139130 (+) True AMCG00010552
AMCG00010551 mRNA downstream 39982 35142566 ~ 35149632 (+) True AMCG00010551
AMCG00010557 mRNA downstream 80347 35182931 ~ 35183883 (+) True AMCG00010557
AMCG00010555 mRNA downstream 86799 35189383 ~ 35193509 (+) True AMCG00010555
AMCG00010556 mRNA downstream 113634 35216218 ~ 35250157 (+) True AMCG00010556
TU101759 other upstream 89659 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 394958 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 1166936 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 5598901 29494617 ~ 29503451 (+) False AMCG00010431
TU100171 other upstream 7195523 27906497 ~ 27906829 (+) True G80326
TU101832 other downstream 367751 35470335 ~ 35477584 (+) True AMCG00010562
TU102021 other downstream 974529 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 988955 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 2127844 37230428 ~ 37251169 (+) True G81971
TU102257 other downstream 2133182 37235766 ~ 37251169 (+) False G81971

Expression Profile