RNA id: TU101918



Basic Information


Item Value
RNA id TU101918
length 1110
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G81707
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35702689 ~ 35704527 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGAGGGGTACAGTCGCAAACTGTGACCTGCAGGAAGATGACTTGAACAATTCAGCTGTGCAGGGAAGTAAACCTGGGGACCAACAGACCCAGGCTTTGAACTGTAGTCTGGGGAATTCAGAGGATAACATTCCAGCAAGGGAACAAAACAGGGATTTAAACTTGGGAGGAAACAATGTAGCTAATGATCCAAACACGCATCCTCTAACACCGCCACTTTCTCGAGAGTTGTCTGATAAGCGGCTCCAAAGTACATTTCATGCAACAGACATGCAAGAAAGGGCTGAAAACGGACATCTGAGGAACCAGTTGGCATCACTCTCTGCTGAAGTGAAACATCTTAAACAAATGCTTTTGGCAAAATCGACTgcataaatcaaaacatgttttaggtTTTTCCAAGTTAAATGCAACAAGCCTTTATCTCATCTGTATTGTACATTCTGCTCTTCTATTGTTAACTAATTGGGTGACCTTAATCTTTCATTAAGTTCCTTGTTTTGACTGGTGTCAAattttaaaccttttcttttcttctgttcttgaGTTGATGGTCCTGCACAAAGTTTACATATCCTGATTTGTTTATGCAAAATGTGCATTGCTATGTATATAAAACGattattatattcttaaaatgtttaatgaatagGTGCAGTATTgtgttaaacaatattttaagtaaatattgtTACTCTATACTCTATGCTATGTAACCAAAAAAAAGCAAGACagtattgaaaatgtatcagTAATGTACAGCGTGTCACACAATAGGTCATTAAGTGAGATTAAACCTAAAGGTTTTCTCAAGCCTTAATAGTAGTAGTTTGAATTGTTGCATTGTAGAGATCAGAGGATATGAAGCCTTTATGCATAAGTCTAAATCAcctgttatatataaaatgggcAAACTCTGAAAtagtattgatgtatttttattgaatcCAGCCTTACACTTAAAATAAGCCattattaatacttttaattgCAATTGAAAACATGgccaacaattattaaaatattaaatgcatgatGTCTACCATCGCACATCTATGTTTGGATGTGAGTTAGTGTCAATGTGTCAtgtgtatatacaaaaatgtatata

Function


GO:

id name namespace
GO:0004145 diamine N-acetyltransferase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101882 lncRNA upstream 36009 35662163 ~ 35666680 (+) True G81675
TU101845 lncRNA upstream 176501 35480800 ~ 35526188 (+) True AMCG00010563
TU101769 lncRNA upstream 600105 35102352 ~ 35102584 (+) True G81586
TU101766 lncRNA upstream 652077 35050405 ~ 35050612 (+) True G81583
TU101765 lncRNA upstream 663222 35039257 ~ 35039467 (+) True G81582
TU101920 lncRNA downstream 401 35704199 ~ 35704527 (+) False G81707
TU101923 lncRNA downstream 3719 35707517 ~ 35713953 (+) True G81710
TU102059 lncRNA downstream 441040 36144838 ~ 36145081 (+) True G81812
TU102061 lncRNA downstream 443745 36147543 ~ 36148008 (+) True G81814
TU102146 lncRNA downstream 924103 36627901 ~ 36628706 (+) True G81880
AMCG00010570 mRNA upstream 1193 35700661 ~ 35701496 (+) True AMCG00010570
AMCG00010566 mRNA upstream 90148 35604138 ~ 35612541 (+) True AMCG00010566
AMCG00010564 mRNA upstream 147690 35544049 ~ 35554999 (+) True AMCG00010564
AMCG00010563 mRNA upstream 176465 35513000 ~ 35526224 (+) False AMCG00010563
AMCG00010562 mRNA upstream 225099 35474654 ~ 35477590 (+) False AMCG00010562
AMCG00010569 mRNA downstream 15437 35719235 ~ 35731357 (+) True AMCG00010569
AMCG00010568 mRNA downstream 42739 35746537 ~ 35751114 (+) True AMCG00010568
AMCG00010572 mRNA downstream 99426 35803224 ~ 35808390 (+) True AMCG00010572
AMCG00010574 mRNA downstream 239049 35942847 ~ 35944273 (+) True AMCG00010574
AMCG00010579 mRNA downstream 282124 35985922 ~ 35988965 (+) True AMCG00010579
TU101832 other upstream 225105 35470335 ~ 35477584 (+) True AMCG00010562
TU101759 other upstream 689996 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 995295 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 1767273 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 6199238 29494617 ~ 29503451 (+) False AMCG00010431
TU102021 other downstream 373315 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 387741 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 1526630 37230428 ~ 37251169 (+) True G81971
TU102257 other downstream 1531968 37235766 ~ 37251169 (+) False G81971
TU102276 other downstream 1557526 37261324 ~ 37264049 (+) True G81987

Expression Profile