RNA id: TU101920



Basic Information


Item Value
RNA id TU101920
length 329
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G81707
representative False

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 35702689 ~ 35704527 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACAAAAGTGAAATCAGactgaaatatgttgtttttgttcatttgaacAGAACACCTTGGCTTAATGTATAGTTATGACTTTGTATATTCTATATTTgctatgtgtgtgttatttctCAATTTGGAGTTGGAGATACAACTTGTTAcaattttgatgtattttttattttgcagatagTCTACATTCAGAAACATTCTTGTAAGTCAGTGTTAGAGAAACGGATTTGTTTATTAGGATGATAACCTTAGAGTATGAGCAGAAACTTATTTTGTAGCACTGATGCAATGTGGAATTTTGGATGAAATGTAGTTATCACTGATTAAAACAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU101918 lncRNA upstream 401 35702689 ~ 35703798 (+) True G81707
TU101882 lncRNA upstream 37519 35662163 ~ 35666680 (+) True G81675
TU101845 lncRNA upstream 178011 35480800 ~ 35526188 (+) True AMCG00010563
TU101769 lncRNA upstream 601615 35102352 ~ 35102584 (+) True G81586
TU101766 lncRNA upstream 653587 35050405 ~ 35050612 (+) True G81583
TU101923 lncRNA downstream 2990 35707517 ~ 35713953 (+) True G81710
TU102059 lncRNA downstream 440311 36144838 ~ 36145081 (+) True G81812
TU102061 lncRNA downstream 443016 36147543 ~ 36148008 (+) True G81814
TU102146 lncRNA downstream 923374 36627901 ~ 36628706 (+) True G81880
TU102238 lncRNA downstream 1408448 37112975 ~ 37113181 (+) True G81954
AMCG00010570 mRNA upstream 2703 35700661 ~ 35701496 (+) True AMCG00010570
AMCG00010566 mRNA upstream 91658 35604138 ~ 35612541 (+) True AMCG00010566
AMCG00010564 mRNA upstream 149200 35544049 ~ 35554999 (+) True AMCG00010564
AMCG00010563 mRNA upstream 177975 35513000 ~ 35526224 (+) False AMCG00010563
AMCG00010562 mRNA upstream 226609 35474654 ~ 35477590 (+) False AMCG00010562
AMCG00010569 mRNA downstream 14708 35719235 ~ 35731357 (+) True AMCG00010569
AMCG00010568 mRNA downstream 42010 35746537 ~ 35751114 (+) True AMCG00010568
AMCG00010572 mRNA downstream 98697 35803224 ~ 35808390 (+) True AMCG00010572
AMCG00010574 mRNA downstream 238320 35942847 ~ 35944273 (+) True AMCG00010574
AMCG00010579 mRNA downstream 281395 35985922 ~ 35988965 (+) True AMCG00010579
TU101832 other upstream 226615 35470335 ~ 35477584 (+) True AMCG00010562
TU101759 other upstream 691506 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 996805 34701438 ~ 34707394 (+) True G81496
TU101485 other upstream 1768783 33903815 ~ 33935416 (+) False AMCG00010529
TU100533 other upstream 6200748 29494617 ~ 29503451 (+) False AMCG00010431
TU102021 other downstream 372586 36077113 ~ 36079892 (+) True AMCG00010578
TU102028 other downstream 387012 36091539 ~ 36094376 (+) False AMCG00010585
TU102256 other downstream 1525901 37230428 ~ 37251169 (+) True G81971
TU102257 other downstream 1531239 37235766 ~ 37251169 (+) False G81971
TU102276 other downstream 1556797 37261324 ~ 37264049 (+) True G81987

Expression Profile