RNA id: TU102256



Basic Information


Item Value
RNA id TU102256
length 1313
RNA type TUCP
GC content 0.48
exon number 9
gene id G81971
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37230428 ~ 37251169 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttattatttttaatttgcaggttTAACAGACTCTGTGACCAGCTCTTGCATCAGGACAGAGACAACCAAAAGaattgcaatattttttaagaagaaaatagtgagagagaaatgtgttacaaataagttgtcagaaaaatatgaagGGTGGCAAGACGGAGTATGCGGCTGAGTTGGGGTTCCAGAAAAAGGGAGTCCTTCCAGACAGCAACATATTTAAGAACTGGATGGAGTCAACAAAAGACAACCCAGATATTGTGGAGTATgagCTGCGGCCCATTCTCAATCTGGTGAGGGGCTTCCCCTGCGCAGTGACCAAGAGGAGAAACCTGGAGAGGGCCATCGTGGAATACTTGGAAGCATTCGACTAGTGCAAGTGCGCCCCCTGCCCCAACAACGCCAAGCCAGTGCTGTCGGGcactgagtgtctgtgtgtgtgtcagacaggAACCTATGGAGAGAACTGTGTCCAACGGGCGCCAGACTACACCTCCGATGCCGTGGATGGGTACTGGAGCTGCTGGGGTTCATGGAGTGCATGTGACTCAtcgatgaagaggaggaggaccaGAGAGTGCAATAACCCTTCCCCATTGCGTGGTGGGAAACCATGTGCCGGTGACAGCCAAGAAGACGAAGAATGCTTCATTTCCATCTTCCAAGGggAAACTCTATGTATCCATGATAATGAAGTAGAAAAAGAAGATGAACAGATCCCTACAGGGACAGATGGACCTGGTTGTTCAAAACCCCCAATTCCAGACAACGGCTATTTGAGGATAAATAAGAAGCGATATCACTTTGGCGAAATGGAGGAATTGGTCTGTTTTACTGGCTTTGAAATGGAAGGATACCCGTATGTTAGCTGTCTACCCGACGGCACGTGGAAAGTGCAGAAAGTTCAGTGCATAAAGGAGTCTTGCGAAAGACCTGCTGTACCTACTGATGTCTCTGTATCTCCATTTAAAGAGGACTACAGTGTTGGGAATGTCATTACCCTCCGCTGTGGTTCAGGTCTGGTTCTTACTGGACCTCAGTATTACACCTGTGGGACACACCTTCGCTGGGAGCCTGCCTTCCCTAGAGACATCACTTGTGAAAATGAGAGGCCCTTTGTTTCTGATGGCAGTTGCAAACTGGGAGAAAAACAGACCGACTCTGGGTGTATCTGCTTGTCACCAGAAACGGATTGCCGATCTTCCAGAGAAGATCTTTGTGTCTTGGATGCAGAAGCAGGTATTTCTTTGATGACATCCACCTGTGCCTTTCACTCGAAGAGGTGTGAAGGACAGAAGCTGCATTTCCTTAGCNNN

Function


GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102238 lncRNA upstream 117247 37112975 ~ 37113181 (+) True G81954
TU102146 lncRNA upstream 601722 36627901 ~ 36628706 (+) True G81880
TU102061 lncRNA upstream 1082420 36147543 ~ 36148008 (+) True G81814
TU102059 lncRNA upstream 1085347 36144838 ~ 36145081 (+) True G81812
TU101923 lncRNA upstream 1516475 35707517 ~ 35713953 (+) True G81710
TU102270 lncRNA downstream 998 37252167 ~ 37253628 (+) True G81983
TU102279 lncRNA downstream 15593 37266762 ~ 37267347 (+) True G81990
TU102356 lncRNA downstream 199952 37451121 ~ 37455288 (+) True G82053
TU102364 lncRNA downstream 246573 37497742 ~ 37498116 (+) True G82059
TU102360 lncRNA downstream 247948 37499117 ~ 37520738 (+) True G82056
AMCG00010612 mRNA upstream 7109 37221441 ~ 37223319 (+) True AMCG00010612
AMCG00010611 mRNA upstream 33050 37194755 ~ 37197378 (+) True AMCG00010611
AMCG00010609 mRNA upstream 200359 37019376 ~ 37030069 (+) True AMCG00010609
AMCG00010608 mRNA upstream 220733 37004385 ~ 37009695 (+) True AMCG00010608
AMCG00010605 mRNA upstream 314438 36904382 ~ 36915990 (+) True AMCG00010605
AMCG00010615 mRNA downstream 106102 37357271 ~ 37361755 (+) True AMCG00010615
AMCG00010622 mRNA downstream 111909 37363078 ~ 37366492 (+) True AMCG00010622
AMCG00010621 mRNA downstream 137534 37388703 ~ 37393207 (+) True AMCG00010621
AMCG00010620 mRNA downstream 142893 37394062 ~ 37400799 (+) True AMCG00010620
AMCG00010627 mRNA downstream 223741 37474910 ~ 37481880 (+) True AMCG00010627
TU102028 other upstream 1136052 36091539 ~ 36094376 (+) False AMCG00010585
TU102021 other upstream 1150536 36077113 ~ 36079892 (+) True AMCG00010578
TU101832 other upstream 1752844 35470335 ~ 35477584 (+) True AMCG00010562
TU101759 other upstream 2217735 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 2523034 34701438 ~ 34707394 (+) True G81496
TU102276 other downstream 10155 37261324 ~ 37264049 (+) True G81987
TU102525 other downstream 635051 37886220 ~ 37888163 (+) True G82192
TU102591 other downstream 917987 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 995852 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 1386334 38637503 ~ 38640125 (+) True AMCG00010681

Expression Profile