RNA id: TU102257



Basic Information


Item Value
RNA id TU102257
length 685
RNA type TUCP
GC content 0.46
exon number 6
gene id G81971
representative False

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37230428 ~ 37251169 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGAAGACGAAGAATGCTTCATTTCCATCTTCCAAGGggAAACTCTATGTATCCATGATAATGAAGTAGAAAAAGAAGATGAACAGATCCCTACAGGGACAGATGGACCTGGTTGTTCAAAACCCCCAATTCCAGACAACGGCTATTTGAGGATAAATAAGAAGCGATATCACTTTGGCGAAATGGAGGAATTGGTCTGTTTTACTGGCTTTGAAATGGAAGGATACCCGTATGTTAGCTGTCTACCCGACGGCACGTGGAAAGTGCAGAAAGTTCAGTGCATAAAGGAGTCTTGCGAAAGACCTGCTGTACCTACTGATGTCTCTGTATCTCCATTTAAAGAGGACTACAGTGTTGGGAATGTCATTACCCTCCGCTGTGGTTCAGGTCTGGTTCTTACTGGACCTCAGTATTACACCTGTGGGACACACCTTCGCTGGGAGCCTGCCTTCCCTAGAGACATCACTTGTGAAAATGAGAGGCCCTTTGTTTCTGATGGCAGTTGCAAACTGGGAGAAAAACAGACCGACTCTGGGTGTATCTGCTTGTCACCAGAAACGGATTGCCGATCTTCCAGAGAAGATCTTTGTGTCTTGGATGCAGAAGCAGGTATTTCTTTGATGACATCCACCTGTGCCTTTCACTCGAAGAGGTGTGAAGGACAGAAGCTGCATTTCCTTAGCNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102238 lncRNA upstream 122585 37112975 ~ 37113181 (+) True G81954
TU102146 lncRNA upstream 607060 36627901 ~ 36628706 (+) True G81880
TU102061 lncRNA upstream 1087758 36147543 ~ 36148008 (+) True G81814
TU102059 lncRNA upstream 1090685 36144838 ~ 36145081 (+) True G81812
TU101923 lncRNA upstream 1521813 35707517 ~ 35713953 (+) True G81710
TU102270 lncRNA downstream 998 37252167 ~ 37253628 (+) True G81983
TU102279 lncRNA downstream 15593 37266762 ~ 37267347 (+) True G81990
TU102356 lncRNA downstream 199952 37451121 ~ 37455288 (+) True G82053
TU102364 lncRNA downstream 246573 37497742 ~ 37498116 (+) True G82059
TU102360 lncRNA downstream 247948 37499117 ~ 37520738 (+) True G82056
AMCG00010612 mRNA upstream 12447 37221441 ~ 37223319 (+) True AMCG00010612
AMCG00010611 mRNA upstream 38388 37194755 ~ 37197378 (+) True AMCG00010611
AMCG00010609 mRNA upstream 205697 37019376 ~ 37030069 (+) True AMCG00010609
AMCG00010608 mRNA upstream 226071 37004385 ~ 37009695 (+) True AMCG00010608
AMCG00010605 mRNA upstream 319776 36904382 ~ 36915990 (+) True AMCG00010605
AMCG00010615 mRNA downstream 106102 37357271 ~ 37361755 (+) True AMCG00010615
AMCG00010622 mRNA downstream 111909 37363078 ~ 37366492 (+) True AMCG00010622
AMCG00010621 mRNA downstream 137534 37388703 ~ 37393207 (+) True AMCG00010621
AMCG00010620 mRNA downstream 142893 37394062 ~ 37400799 (+) True AMCG00010620
AMCG00010627 mRNA downstream 223741 37474910 ~ 37481880 (+) True AMCG00010627
TU102028 other upstream 1141390 36091539 ~ 36094376 (+) False AMCG00010585
TU102021 other upstream 1155874 36077113 ~ 36079892 (+) True AMCG00010578
TU101832 other upstream 1758182 35470335 ~ 35477584 (+) True AMCG00010562
TU101759 other upstream 2223073 35012315 ~ 35012693 (+) True G81576
TU101662 other upstream 2528372 34701438 ~ 34707394 (+) True G81496
TU102276 other downstream 10155 37261324 ~ 37264049 (+) True G81987
TU102525 other downstream 635051 37886220 ~ 37888163 (+) True G82192
TU102591 other downstream 917987 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 995852 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 1386334 38637503 ~ 38640125 (+) True AMCG00010681

Expression Profile