RNA id: TU102276


Basic Information

Item Value
RNA id TU102276
length 577
RNA type TUCP
GC content 0.46
exon number 4
gene id G81987
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37261324 ~ 37264049 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGATGAACTGAGGGTTGGGAATTGTTTTCTCCAGTTTATATCTATAAGATCCTAGCTTCTGTGAGAGAGAGTAAAGGTTTTGTGGCAGCTCTCCCTTTGTCTTTTACAATGAAGGTATGGGTGACATTAATCCTGCCGAGTCTGGCAGCAATTCTGTCTCTTGTGCTCAAAGTCAGTTGTGAAACGCCCTTGAATTGTCAGTGGGGTGCGTATGGTGACTGGTCAGAATGTGATGGTTGCAAAAAGACACAGACTCGGATGCGCCCGGTGCTGGTGTACGGGCAGTATGGCGGCAGCCCGTGTTCTGGTGAAGCCTTCCAGACACGAGCCTGTATCCCCACAAGAGGCTGTCCCATAGAAGCAGGCTGTGGAGACCGGTTTCGCTGCTCTTCAGGTGGGAATGGATACCTTTACcacagatgtatttgttttatatatcatcattatcagtctatatcgatccactgctggatgaaggcctcccaagatgtttccacttgcttcaatctacagcttctcttttccatgtcatgcctgcaaagattatgatttaatcttcccatcttttatatgTTCA

Function

GO:

id name namespace
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102270 lncRNA upstream 7696 37252167 ~ 37253628 (+) True G81983
TU102238 lncRNA upstream 148143 37112975 ~ 37113181 (+) True G81954
TU102146 lncRNA upstream 632618 36627901 ~ 36628706 (+) True G81880
TU102061 lncRNA upstream 1113316 36147543 ~ 36148008 (+) True G81814
TU102059 lncRNA upstream 1116243 36144838 ~ 36145081 (+) True G81812
TU102279 lncRNA downstream 2713 37266762 ~ 37267347 (+) True G81990
TU102356 lncRNA downstream 187072 37451121 ~ 37455288 (+) True G82053
TU102364 lncRNA downstream 233693 37497742 ~ 37498116 (+) True G82059
TU102360 lncRNA downstream 235068 37499117 ~ 37520738 (+) True G82056
TU102361 lncRNA downstream 235068 37499117 ~ 37501058 (+) False G82056
AMCG00010612 mRNA upstream 38005 37221441 ~ 37223319 (+) True AMCG00010612
AMCG00010611 mRNA upstream 63946 37194755 ~ 37197378 (+) True AMCG00010611
AMCG00010609 mRNA upstream 231255 37019376 ~ 37030069 (+) True AMCG00010609
AMCG00010608 mRNA upstream 251629 37004385 ~ 37009695 (+) True AMCG00010608
AMCG00010605 mRNA upstream 345334 36904382 ~ 36915990 (+) True AMCG00010605
AMCG00010615 mRNA downstream 93222 37357271 ~ 37361755 (+) True AMCG00010615
AMCG00010622 mRNA downstream 99029 37363078 ~ 37366492 (+) True AMCG00010622
AMCG00010621 mRNA downstream 124654 37388703 ~ 37393207 (+) True AMCG00010621
AMCG00010620 mRNA downstream 130013 37394062 ~ 37400799 (+) True AMCG00010620
AMCG00010627 mRNA downstream 210861 37474910 ~ 37481880 (+) True AMCG00010627
TU102256 other upstream 10155 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 10155 37235766 ~ 37251169 (+) False G81971
TU102028 other upstream 1166948 36091539 ~ 36094376 (+) False AMCG00010585
TU102021 other upstream 1181432 36077113 ~ 36079892 (+) True AMCG00010578
TU101832 other upstream 1783740 35470335 ~ 35477584 (+) True AMCG00010562
TU102525 other downstream 622171 37886220 ~ 37888163 (+) True G82192
TU102591 other downstream 905107 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 982972 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 1373454 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 1518030 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile