RNA id: TU102361


Basic Information

Item Value
RNA id TU102361
length 1807
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G82056
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37499117 ~ 37520738 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcaattctacactttttttttcaatgcatgCTGTACAGTTAATGTATCTTAAgaaagataatttattttcctttttctattttcagaCCATCCTCAATCCCCTTTACGAGGGAACTCTACCCCCTGCTTATATAGTCATGGTCTCAATGGGCATATGGGCTTTCTTCTCCTCCGGGGGCTCCGTGCAGAACCTGCAGTGCTTCTTCACATGTAGTAAAAGCGACGTGGATTCACAAGTTACTTCTTAACGCGGACATCCCGTCGATGCGGTGTCACTTTTGGGCAGACGATCCCACCCGGATTTCCCAGGCGTTCCTGCAACGCTCTGGAAGAAAACGACACCAAGCAAACTACAGGAGGGGGGGGCTGTGGACGGGCAGCCGCATGGACCCAACGCTCCTCCCTGTCCGGAGAACATTGCTCGAGGGATGAGTCATCCCGTACACATCGTAAATGGACTCGATCTCTTTTTATGCCTTCTTGTAATcctgagagagtgagtgagtgaaacGGATCCAAAAAGAGAgaactgttttaattttttcctaGTCTTTTATTTGGAGTAGGGCTGTACTAAACGTcatctgttttctttgtatttttttactatatGATGAGTGTGAAACGGGAACAGTAGCTTTTATAATCCTTCTTTTACAAGGATGCTTTTCAGTTTATTCTCCCTTTCAGCCCAAGGATTTGATTCATATCGTgatttggggggtggggtggcgggggtgcagtgttgccaaagtcCTCTCTTTTCTGGGTTCAGCCTTTGTCTTTTTACATCTCCTGGGTTTCAGCTCTGGTTATTCGAGCTGTTTGTAGGGGTTGATCTAGACTCAAGGGGGGCGTTATTTCACATTGCAAAGCCGCCACAGAACAATAtagtgatttgtatttttgttttaatgcttcACGGGTTCTGCTCATCTGAATAaaatggaggtgggggggagatGCCCTGTAGAATCTGGTCTTTGTTCATCGTGTTGGATATTGTAGACATAGTTATCGGTCTGCCCCATCTACCCCACACCTCCTCCTCGGCCCGACTCTCATAGGATcagagagtgaaggagaggtGAAAAGTGTACAAAATATGTCTTGTGTCTTAGCCATTTGGACCACCTGATAAGAAAAAACACTGCCGGTATGAAagtgtgtatttgttatgttttttctatCTTGTTTTGAAGTCgacactattaaaaaaaactatttttgacTAACCGTGACTTCCAAGATAATGTAAATTCGGGTTCAGATGTCTGCACTCGTGTAATAAAGCCGAAGATCAGTTTAAAGTctcttttattatgttttttatcatCAGAATATCATACTGACATGCTTTGACTCTTAACGGGCCATTAACTTGAATACCTTTTCCAGGTAGTTTTGTCCCAAATCAGTTATCCCcgaaaatagtttaaaaaaaaaaaaaaaattgtgtccTCCACGATTGGATAACAATTTCTCTGTACAATGAGGCTTCTGAAAATACTTCCTCAACCCAAATGGAAGGGAAAGAACAGGCAGGATATTACTGACGTGGAGGGTTTGAGGTTTTGTCCTTCATCGGTGGACTTGACAGGCAGTGTGTGATGGTTATTTTCCTCCGTTCGGTGTTTCTAGTGATCATGTCTGAGGTCTGTAATGCTCGGTTTTCTAGAGCAGTTATTTAGGCAGAAATCAAGCAGGTTTCGGAGTGAGAGTGTAACGGGAAAGGAAAATGcagattaaagtattttataataatatctTCAGTTGTCCCATCTTTGGTTAGCCCAGTCGCGATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102364 lncRNA upstream 1001 37497742 ~ 37498116 (+) True G82059
TU102356 lncRNA upstream 43829 37451121 ~ 37455288 (+) True G82053
TU102279 lncRNA upstream 231770 37266762 ~ 37267347 (+) True G81990
TU102270 lncRNA upstream 245489 37252167 ~ 37253628 (+) True G81983
TU102238 lncRNA upstream 385936 37112975 ~ 37113181 (+) True G81954
TU102366 lncRNA downstream 9173 37510231 ~ 37510832 (+) True G82061
TU102362 lncRNA downstream 25025 37526083 ~ 37533144 (+) True G82057
TU102369 lncRNA downstream 53395 37554453 ~ 37556601 (+) True G82063
TU102398 lncRNA downstream 157249 37658307 ~ 37661155 (+) True G82092
TU102464 lncRNA downstream 242467 37743525 ~ 37743731 (+) True G82140
AMCG00010626 mRNA upstream 4377 37482438 ~ 37494740 (+) True AMCG00010626
AMCG00010627 mRNA upstream 17237 37474910 ~ 37481880 (+) True AMCG00010627
AMCG00010620 mRNA upstream 98318 37394062 ~ 37400799 (+) True AMCG00010620
AMCG00010621 mRNA upstream 105910 37388703 ~ 37393207 (+) True AMCG00010621
AMCG00010622 mRNA upstream 132625 37363078 ~ 37366492 (+) True AMCG00010622
AMCG00010634 mRNA downstream 267721 37768779 ~ 37781102 (+) True AMCG00010634
AMCG00010635 mRNA downstream 294471 37795529 ~ 37809247 (+) True AMCG00010635
AMCG00010636 mRNA downstream 364004 37865062 ~ 37873485 (+) True AMCG00010636
AMCG00010641 mRNA downstream 459694 37960752 ~ 37971680 (+) True AMCG00010641
AMCG00010644 mRNA downstream 509001 38010059 ~ 38025329 (+) True AMCG00010644
TU102276 other upstream 235068 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 247948 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 247948 37235766 ~ 37251169 (+) False G81971
TU102028 other upstream 1404741 36091539 ~ 36094376 (+) False AMCG00010585
TU102021 other upstream 1419225 36077113 ~ 36079892 (+) True AMCG00010578
TU102525 other downstream 385162 37886220 ~ 37888163 (+) True G82192
TU102591 other downstream 668098 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 745963 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 1136445 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 1281021 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile