RNA id: TU102362


Basic Information

Item Value
RNA id TU102362
length 6757
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G82057
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37526083 ~ 37533144 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGGTTTCAGTCATTTATTACAGAAGAACAAAGAGggggaaagagaaacaaaaggagaaagaaaaacactgaaatcatTCAGGAAAAGAAGCGGTCAAAGGTCTGTCAACATCCTAGGGCTTTAAAGCAAGTGAGTGTATTGTAAACGTCTGCAACAGCTGTGACGGCACTATGTAAAATCAAAACTGACCGACTGAAGACTATGTAGAAAATATTGTAGCATAGTTTTAAGATCTACAATACAGAATTCTGCCTGCTGAACTTCCACAACAGGAAAACGCCGGTTCATTTCCACATCGCAGCTGCAGTGAACATAAGCCTGTTCAGCAAGACGAGATGCACTGGAAGACGCCTTGTaagatgaatgaaaaatgttgaCAGCCCCCTGCCTGCCCTCCAGACAAAAACAGAGCtataaacacaatgtaaagtcGGTCAGAAGGAACATCGAGAGAGGGAAGCTCCGTGGGGTTTGGGGTTTCTGTCAGGGAAGATTGGCCTTCATATTTAAGCGATCACAGTTCATCTGGGAAGAGTGGGAGGGAAGTGGCACCGAACAGATGGCGAGAGCAGGGATCTGAACTAGCTGAGGCAAAAGGGATTTGGAAACATGGCAGTTCTTACAAAATGATACATTCTGAAAGAGAGGCCAACAAAAGTAACATCGAGTGTTCGATCAATATAAATGGCTCAATTAGTTTCCTAGACTTCTCCGTAGTGCCTAAAGTTTGCTCGTTTGGCGCATTTCTGAAGGTGGGTTGTAAATGGCTAGTCAATCCGATTAGCTTCTAGAAATGCAAATCTAGCCAGAATACCTTCATATAATAGATTTAAACTCATTCATAATAGTGTGAGAGagaatttacattttccttacTCTGAAAGGGTTTAAAAACACTGTGCTAAACgatgaaaacactgaaatgaataaaaaattataaGTGGAGAAggacaaccccccccccccaaggaGCTGCCGATCATGAAGTAAGAGATGATGCAGGAGGATAAAATGAAGAGGAGGGGTGCCTAGAGAGTGGTCATGTCATTCAGCGCATTGTCCAACTCCTCACTGATGGCTTTACCCTTCAGCTTCTGAGAGTACACCTCGTCTGCAGAGTCCCAGGGCAAAGCAGAGCGTGGGGGGGGACAGTGCGGAAAGAGATGGCAGGAAAATGACAAGACGAAGACAGTGAAATGGTACAGAACACAGCGAGGGgtggaaaaagaggaaaaacaaagtcAGAGTGAACAACTCCAAGGAAAAGgtctacaattttttttaactaggcTCATAGTCCAAGTGTAGTTTCTTCAAGTTCTTTGCACTTATTGGTCATTTATTGGTCTGTTCGCTTTTTCAGAATACAGAACTTTGATGCTGTCTGAGGAACCGACTACCAGCCATGTTATTTAGAGCCAATTCTTCCAAAATTAGACTGTGCATAAGCTACTAAAATCTAATGTGAATACTAAGCAGCTGTCCAATACTGCAAGTTAAAATGCCCATCGATCACACCATTTTATCCAATAATAAAAGTGCAAAGAACACAAATCCCACTCACCCAAGAGAAGCCGACAATGTGCAGACTATTTTTAGCACTAGCAGGTCAACAGCATTACATTCGgatgcaaataaatattctcTTGAGTAGGACTATTCTGCACAAGTCACTGCCAACGTATCTTTGGGGAAGTGGGTCTTACAACACTATCTACAATTAATCTCATCCCTATACAAACCAGGCCTAGAAGGTTGTGTGGGTTCTTTAACCTTAAAGTGCAAAACTAAAACCATGccacagcacaacacaatgaCCTCCATTTTGGATCCCAAGACCATGAGTGACAAAACTCATTAGAGGTTAGAATAGTCAGTTTAGCACTCTCGAAAGGGGTCAGTTTTCCCAGCAAACCTTGACATCACCTagtgtgtgaaataaatgtcCTAAAAGATACATTTACATCGGCATTTCCCTGACTTCTACCCATTTCTGACGGATATCAAAGGATATACTTTACCTCTTTGCTACTGCTAAGCATTCTTTCACTTCAGAAACCGCTTAATTGGAGTTGAGATGTGAATGATACAGTAGGTCAAGGCAATTAGTGGATCATGTGCAAAATTACAGTCAAGCGTCtaaatacattgtacaatgaaATAGGGAAAAAATGTAACAAGCAACCAATCTCGGTCAAGAGTTTCTCATTAAAATCTGTCCCAGAATACAGGATGTAGATTAATATGGAACAGCTATGACTAAGTGTGCGCACGTCTGCAGTATTGCATTAAAATCACTATAAAAggtggttaaaataaataataaaataagaagcgCTGGCAAATCAATTCTTAGctgatattaaataattttatactAAATTTACATCAAGTGAGATTCTGTATACCTCCTCTAACTGTTGGCAAACAAGAACCACCACACTAATATACATATGAAGCCAAAATATTGAGTAGGTTTTgaacttttaaatgcatttacaaatctaatgaacccccccaaaaaagggaCTCAAGGTTTAAGGGAAACAGCCTTagtaaacttttaaaatctgcGAGTAAACATCAGTGAATGAAATGTAGTCCGTACAGAACACGCTTCAACAAAGCATTTCATAAAAGCTCACGTGTATTAGAGTATGGTTAAGGTTATTGTTCTGGTTAGATGTCGATCAGCAGACTGCAACCGGACATACCAAATTAGagtcaaacaaaatgcatgcatacCTTCCAAGTCATCAATGGTCTTTTCAAGTTTTGCTACAGATCTCTCTGCAAACTCAGCACGGGTTTCAGCCTTTTAAGCTTATCTGTTAGAAGTCTGATTTCTTCTTCATATTTATCCTCCTTTTGTgaatactaaaaaataaatttaaatgttatgaacACAATCACTTGCATAACTTTGCTCTCTCAGATATTCAAAATCAATCTTGCGCTAAAtgatattcaatttaaaatgtcttctgcatgcttattaaatgtatatatatatataagtatataaatgtaacttCTTCAACATAGGACTCTAGAAGGCACTACCAAACTAACTAGGATTCAGAAGATAATCACATCCAAGAACAAAATGAGTCTGGCTTAACACTGTTGCAAATGTGTCTCagtaaactatacatttaaagagAAGCCCATGTAAGGCATAAAGTATTACATGTGTAGAATTGCAACACAATGACACAGAAGGTACTAGAGATGAAAGCCATGTGCAATGCTAATGCTAAAGCTAAAGCAAAGAAGCAGGGAAAGAGGAGAAAGCAAGATGTTTTCTCTGTACAAACGGGGGTATCCTAACGGGAATCCTTGGAGAATGAGAACAAAAGGCCAGCTCACATTCCCGTCACCTACTCACTGGCGACAGCACAATGGGAAGAAAACGCCGAATTGTAAATCGGCCTGGAAAGGAGCAGAGTGCCTGAACGCTGGGGACCCTACGGTTCTTCCAGCCTGTGCAACTGATCTAAGGTTTGCCACTTTCAGACCTTTGTACTCGAGTCAACaatgttttacttcattttttttgtttgttgtgctgCGGTTAACAGTACTTCTGAACTATGCAAGATCTGATCATTTACGgtaatttaaattgtacattttacatgatgAAATATCCTTGTTTTACGGAAGGTGCCCTGGCAGCCGCACAGCTTTACCATCGGCAAAATACTAATTTGCCTTGTTTAATTACACAATAACCGTTGATTTTGGAACTACCAGATTACAAATTGAGACTTTATACAATGCTGGGGAAGAAAGGACTTTTTGACTGCAACAACTCCTAATTTTCCGTGAAGGTTGTTGTTACTGCCTAATTATCAGTGCTTCAGTTTCAGAGTTACTATGACTCCCACGGTTTGGCTCTGGCAGTGGGCGTTTTGCAGCCGAACAGCAGGTCTATCGAGAGCGAGAGGCTGCTAAGCGCCTTTTCTGTGACAGTGCGAGGGGATCCATCACACAGCTTGTCCCATACCTTCTCAGACTGGGCTTCCAGAGACTTCAAGTTGTTGGTGACATTTTTCAACTCTTCCTCTAGGTCACCAGATTTACTGTACAGCAGCAAGAGAAGTGGAAAACGGGAGgggaaggaagagagagggagttgagaagatggagagagagcagcGAATGccggaagaaaataaaaaacccaTAGCAGACCTCGGAGATGGTCAAGCTGCGGAAGTTGGTCAGCAAGGGAAACCAACACTGTCTTGGTGGAGACGGCTACATGTGGCTTTttggagagatggagaaaacTTACCTGCACACCATGCAAGGGGGCTTAAACAAGTAACAACCGAGTTTTTAAAAGGCTTTCAGAAAGGCAGAGACAAAAGAGAATGACCCTTGGTGGAAAAAGTATCAAATTACGCTTCCCTTCAATGCCAAATTAACCTCATAAGTGAAAGCATTTCTCTTGGCATAAACTGCTTCCGACTGGAAGCAGTGCATGAAATTATATAAAGCAACATTACCCAAGATTAATTTCCTCCAGTGATAAAATGCTTGCACCGACACGCATTCGTTtgcaaattaattgtaattaaattaaaaatcaatgccTTTTCAACAGTAAAGGAGTAAAAGCAAGTCCTAcatctataaaaacaaaacaaactgacaccTGGATTGTGAGATGCGAAAAAATTAAACCATCATGGTCATGAGAAGCAGGACAGCCAGTAGGATATAATTGACAATGACACTAGAAACTTCTTCTGTAAGTGTGCGAGATATTTCACACCAAGGGTCTCATCGTTTGCCTGCGACTTCTTTGCCGTGGGCCTCCACAGGGTCAACTATGCTACAGCAAAGCAAGCAGTGGTCAAAGAAACCCCGAGccccccaaataaaaaaagtgagAGCTGGCTAAGCTGCAGAAGAagtcttttttttgggggggtttcaGTCGCAGGAAACCAATAGCATGAAGGGCAGAGGAAGCAGGAATCCGAACTAGCCAGAGGAAAGGAACCATTAGTGACACATCGGAGGTGTTGTGCTAGGCTTGGGCAGTACCTCTTCCTCTGTGGACATCAGGGATTTGAAACTCTGGTCCATTAGTCTAAGCTCCTCTTCCAGCTGCCTGACTCGACTGAGTTAGTCCACAGCAAAGGGGAAGGAGCGGCCAAATGTACATCCCGGGGGAGTGCATTCACGCATGCATTACCAAAAGGGGAGACAAAACCAAGTGCCCTGCTGCAGTTAGTGTATCCAACATCTCTTACTTTAGGTTAGCACTTTCTGGGGGAAATGGGGACTGGAATGACCATACGTTGGACTTAAAGATGCTACTGGAGGAATTTACGTCGGCACTGTGTATAAATTCAGTGTGGCCATCTCTTTTGGAAGTGGAGAATAATAAAACCCCAGGAGCAAAAGCTCTAGATGTACAGTGGCATTCCTTAACCAGTAGATGATTTCTTACGGTTTGTGGACTGTGCATAGTCCGGGGTCATTCAAGGGTAGCTGAGGTTAGACAACTTGCCGCTTCATAGAATCATTTCAGTCCCCACGATACACATGCAAAACCACTTACGGCTCACTTTCCATTATgttcatgcaaaacaaaaccttttataCTTTCATCATTTACAACAAAAGGATATCCATTTAGAAACCTAACCCGAGAtcccaacacaacacaagccATGAAAAACCCAGCAAAAGTCACTGAACTATTTTGATGGAcctgcaaaaatgaaaacatgttatcttcaagtgcttttaaaacataactTGTAGTATTGTTCATCTCATCTAACTAGCTTTCATACAGGCATACATGGTGTTATTTTGTCTGATTGTatcatgcatacaaaataaacacatctctCTCCTCTAACattgaaagttttattttagaaaagttCTCAAAcaccacattttttaaatccagttttgAGACAGGGATAGTGCCAGTATTTAGTTTAATGCCACTAAAATATTTCACCCAATTGATCTTAGTATCACTTGTATATTTGAAAtcacaaatgtgcatttttcGATTGGCAAGGGTGACAGAACTGCTGGTACAATTCCAATCTGTGGTAAATGAGGTCTGATCCAAACTTTATGGACGGCAACACACCACTGTGCTGTGACACTGCACTGCAAAGTTGTCAGCGCAAATTATTAAATCAGGAATGCCCCAAGACAACTTCTAATCATGCcccgtttttctttttctagtgGGCCGTCTAAACTGAGCCTCATTAAGTTCTTCCACTAGATTGCACCACCTTTGTGAGATTTCCTGGGCAGTAAATCTGCTGCAGCAGGGCTGTACAATGACTGGTCTTtatgagagagagcaggagatgAAAGGTGTAAATGAGGTTGTGACGGTCTggataagaaaaaaattaaataaaatccccCAAAATGTATTTCCTATTCAAGAGACAAAAAATGTTCAgtgtcagttattttattatttttaaagcaaagattAGATCTGAAGTGACTCCTGGGTCTACAGAATATCTAGCGTGATGAAACTGGGTCACTCTCACCATCTGTAACTCACTGCAGTTCAGAGAGTTAGGGATGACCTGAGTGAATGCAGGTTTTGAAAAGGCTCCCTACCCCTCTCTGATTCTACCCATGTGAGGAAACGCAGAGATGAATAACAGGTTACACTTACGCCTCGGCCACCTCGGCGCGCTCCTCAGACCGCTCCAGCTCTCCCTCCAGAATAACAAGCTTCCGGGCCAC

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102360 lncRNA upstream 5345 37499117 ~ 37520738 (+) True G82056
TU102366 lncRNA upstream 15251 37510231 ~ 37510832 (+) True G82061
TU102361 lncRNA upstream 25025 37499117 ~ 37501058 (+) False G82056
TU102364 lncRNA upstream 27967 37497742 ~ 37498116 (+) True G82059
TU102356 lncRNA upstream 70795 37451121 ~ 37455288 (+) True G82053
TU102369 lncRNA downstream 21309 37554453 ~ 37556601 (+) True G82063
TU102398 lncRNA downstream 125163 37658307 ~ 37661155 (+) True G82092
TU102464 lncRNA downstream 210381 37743525 ~ 37743731 (+) True G82140
TU102483 lncRNA downstream 292553 37825697 ~ 37825916 (+) True G82156
TU102579 lncRNA downstream 554249 38087393 ~ 38093714 (+) True G82228
AMCG00010626 mRNA upstream 31343 37482438 ~ 37494740 (+) True AMCG00010626
AMCG00010627 mRNA upstream 44203 37474910 ~ 37481880 (+) True AMCG00010627
AMCG00010620 mRNA upstream 125284 37394062 ~ 37400799 (+) True AMCG00010620
AMCG00010621 mRNA upstream 132876 37388703 ~ 37393207 (+) True AMCG00010621
AMCG00010622 mRNA upstream 159591 37363078 ~ 37366492 (+) True AMCG00010622
AMCG00010634 mRNA downstream 235635 37768779 ~ 37781102 (+) True AMCG00010634
AMCG00010635 mRNA downstream 262385 37795529 ~ 37809247 (+) True AMCG00010635
AMCG00010636 mRNA downstream 331918 37865062 ~ 37873485 (+) True AMCG00010636
AMCG00010641 mRNA downstream 427608 37960752 ~ 37971680 (+) True AMCG00010641
AMCG00010644 mRNA downstream 476915 38010059 ~ 38025329 (+) True AMCG00010644
TU102276 other upstream 262034 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 274914 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 274914 37235766 ~ 37251169 (+) False G81971
TU102028 other upstream 1431707 36091539 ~ 36094376 (+) False AMCG00010585
TU102021 other upstream 1446191 36077113 ~ 36079892 (+) True AMCG00010578
TU102525 other downstream 353076 37886220 ~ 37888163 (+) True G82192
TU102591 other downstream 636012 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 713877 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 1104359 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 1248935 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile