RNA id: TU102369



Basic Information


Item Value
RNA id TU102369
length 711
lncRNA type inter_gene
GC content 0.56
exon number 4
gene id G82063
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 37554453 ~ 37556601 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGTTTGCATCTGTCCTCGGCCGCCTTCTTGTCCCCCTCGGCTTGTTCCGCCCTGTCAATCGCGTTCTCCTTGTCCAGCTTCAGCATCTGCATCTTCTTCTTGATGGCGTCCATGGCTGCGGGTCTGCTGTCTCGGCAGGGTGGTCAGGGGCGGTGAAGACGGAGCGCAGGAGTCCAAGGAGCCGAAATGACAGCCTCCAGAGTCCGTGGCGAGTGAGGGCAGTGCGCGGCGCGGCGGGGCTGCTCATAAGCTCGGCTGGGGCCATGCAcgcatgcacagacacacacacacacacacacacacacactctgacacacacacacacacactgacacacacacacacacactgacacactcacacacactgacacacacacacactgactcacacacacactcacacacacactgactcacacacacactcacacacacacNNNNacactcacacacacacacactcacacactcacacacacacactcacacacacactgactcacacacacactcacacacacacacactgactcacacacacggGACTTTTTCCGGGGCTGGGCTGGCGCGCGggttttgtccatctttgggcGGCTCGGATGCTCGGATGTGTCCCGATGCTCAAACCGCAAAGGAATGAAGGTTGGTCCTAAATATATcacccgagagagagagagagagagagagagagagagagagatgttccTG

Function


GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102362 lncRNA upstream 21309 37526083 ~ 37533144 (+) True G82057
TU102360 lncRNA upstream 33715 37499117 ~ 37520738 (+) True G82056
TU102366 lncRNA upstream 43621 37510231 ~ 37510832 (+) True G82061
TU102361 lncRNA upstream 53395 37499117 ~ 37501058 (+) False G82056
TU102364 lncRNA upstream 56337 37497742 ~ 37498116 (+) True G82059
TU102398 lncRNA downstream 101706 37658307 ~ 37661155 (+) True G82092
TU102464 lncRNA downstream 186924 37743525 ~ 37743731 (+) True G82140
TU102483 lncRNA downstream 269096 37825697 ~ 37825916 (+) True G82156
TU102579 lncRNA downstream 530792 38087393 ~ 38093714 (+) True G82228
TU102581 lncRNA downstream 530792 38087393 ~ 38090540 (+) False G82228
AMCG00010626 mRNA upstream 59713 37482438 ~ 37494740 (+) True AMCG00010626
AMCG00010627 mRNA upstream 72573 37474910 ~ 37481880 (+) True AMCG00010627
AMCG00010620 mRNA upstream 153654 37394062 ~ 37400799 (+) True AMCG00010620
AMCG00010621 mRNA upstream 161246 37388703 ~ 37393207 (+) True AMCG00010621
AMCG00010622 mRNA upstream 187961 37363078 ~ 37366492 (+) True AMCG00010622
AMCG00010634 mRNA downstream 212178 37768779 ~ 37781102 (+) True AMCG00010634
AMCG00010635 mRNA downstream 238928 37795529 ~ 37809247 (+) True AMCG00010635
AMCG00010636 mRNA downstream 308461 37865062 ~ 37873485 (+) True AMCG00010636
AMCG00010641 mRNA downstream 404151 37960752 ~ 37971680 (+) True AMCG00010641
AMCG00010644 mRNA downstream 453458 38010059 ~ 38025329 (+) True AMCG00010644
TU102276 other upstream 290404 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 303284 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 303284 37235766 ~ 37251169 (+) False G81971
TU102028 other upstream 1460077 36091539 ~ 36094376 (+) False AMCG00010585
TU102021 other upstream 1474561 36077113 ~ 36079892 (+) True AMCG00010578
TU102525 other downstream 329619 37886220 ~ 37888163 (+) True G82192
TU102591 other downstream 612555 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 690420 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 1080902 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 1225478 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile