RNA id: TU102579


Basic Information

Item Value
RNA id TU102579
length 6322
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G82228
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38087393 ~ 38093714 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTGATGccataatacaatttaatgaatCATAAAAGGGTACAAAATTGAACTTCTTAAAAAAATTGcaacttttaataaataaataataagatatTGCTGAGTTTCCCATGTGAGTGGCAAAAGACTTCGTTCAACTATTTTACACAAGATACATTCCTTATTCTcaacaataaattattttaaagaaacaaatatggattatgagagaaaaaaaacaaacccgaAGAAATACTTTTATACAACTTAAAACAATCTGTTATGTggaacatttctttaaataagaaCTAGCATGTACAATGTTAGGTTGAATGTTGAAGGGTGCCATTTTAGAAAGtaacttaaataaacaaaataataaacaataaacattctccaaataataaaaataatattttgtatatgctGAGGATCGAAAGAAAGagaatcagaaaacaaacaaacaaacaaacaaacaaacaacaacataaacaaaaacatttctatgTCAGTCTGGTTTATAATTGGAAATTGAAGTACACAAAGTGAACCCAATGATCCGAGCAGATATTTGACTGTTATATAGGGCAGTATTCACATCGTATCACTACTCTGTGCAACCATCTTTTCTTGTAATGCAATTCACATAAACCTAGCACTGCTGATGTAGTGTCTTACAGGGAGTTGCCCTGATCAATGCTTGTGTCGTTTGAGCGCCGATGAGACTCAGTTTCAGGGTCTTCCCCTTCTCTGCTATGAGCAAAACTACTCTACAGCCCAATTCAACAGCAATTGTGTTGTCATGATTGTACAAAATGAATGATCAGACTTGAAGTGAACAGTCAGGTTTTGCACAGCTAATTGAATTCTGCTGCAGGCAGTTCATTACAGAACCCAgcatgaaaatacaaatcaaatctcAACCTTGAAATTACTCACGGGCTCCTACATCTGGTAGTACATAGACTTTTCGCACCACAACGGGTTTGAGTGCATAGTTTAGCTTCAGGTGAAAAGACATCACATACATCTGATCGTTGATGTGCCAACGCGACACACGTGGTCACAAGAGAACCCACTGAGACTGAGTGAAGTCACCACAGAATCACGTCAGGTGGCATCGGGGTCATATGAACGACAGCCATTCGAGCTTGAAATAACGCAATGGGTTTTATCAGCGGGACACAACGGGGAGGAGTTGTCATATTGAAGTGTAGTCTGATAAAGCCAAGCCCAAAGTTTGTACAGAAATGCTCTATCACAGACGGCATATGTtcaaaaatgtgaaagtaaAGATTCACTCCTGTTAATATTCCATCCCCTCATGTGACCACACAACCTTGTGTATGAGTCTGAGCTGGACATTGTATGTCTAattccttaatcattgaacacaAACTGAAGTAGTactcacaatttaaataataataattaaagcatGAATATTTTTACAGGTATTCTGCCTAGAATAAAATAGTGCATTCTTACATTGACTACCTATAGAAGACACCATTTTATTCAAGCCGTACATTATCATTGCAGTATGCTTCAGTGATATAATGTCGTTGAAAAGCCTTGCTGATATCCATTTACCACGAATGTCATTTGTTTAGCAGACAATGTGCATGAACTGTATACAGAAATAAGTGTCCTTTGtctatttcaaacaaacaagttGGTCTTTAACACTGCATTGAACTCTAGCATGACAAATCACAATTCACAATAGgtctctaaaaataaaattaaaaataaacatcagtatataaaaagcaaatcaaataatataaatataaatactttacGTACAATTGTATAGACATACTATTACcaaacaatatgttttttagTGTAAAACAGttgttctcaaccctggtcctggagaagccCCTTTTgatccaactgagctctcaattacttaattgaacccttaatttaacaaataatttcctacatcagagccttttaatgattttaaacagtaggggtttaagTTCAGtacagaattgtataaagaacttattaaagaaccaacaattttattacacaatttaaaaagtcaaatctaagcagaatgttacttcaattaagattcaattaagtaattgagagctcggttggaacaaaaacctcaAAGGCCCAGGGTTGGGAACCTCTGGTGAAAAATATAGTGTAAGGACCTTGAAAACACCATTTAAAGGCTCAAACCTAAAGCTGAATCCGAAGGTGAAGGTGTTCATATATAGACTGGAGAAGAAAGGGTCTTCGTTGTGTGAATTAAGATACCTACCCACTGAGGGAGGACTGCTGTACATATCAGATTTAAGGGTTAGCAGAGCGTAGGGGTGAGGTTTCTAAGACGGCTTTACAACTGAAAACACAGGGAGGTGAATTCCTGACCTGCCTGGGGGAGGAATCGCAGGGAAACAGATTTCCAAACAGAAACTGGTCTATGCTGGGCTAGATAGATCTGAGATTGTCCAAAATTAACTAAAACCTAGAGGACTGTATACATGCTGGGCATTTCCTTTACTATGCACTGGTGGTAATGTATGGAACAGTAATCCACAGACGCAAAGGGATCATAGCATCCAAATAACAGATACAACTGACAAAATGAAAGGCAAAAGGACATTTTTTGGAAGATACGATGCAGAAcgaaagaaaaccaaacaaaatttaaaaagcattagcaACGTTGTCCTTTCTTGctggtattatttttaaagttgtttaattttcatcactgttttttatgtacaatggcaaactttttttttttttttttttaaagaaaagctgATAAATTCCTGTCAGGTGTGCCAGTTCACCAACATTAAAGTTCAGCAGATATGCAAttaagattgtgtgtgtgtgtgtttgtgtgccttttgttttcatctttagTTCTGTTGCAGAAAGCAATACAGGTACCTATTATTGTCAATCAAAGACCCGAGTGCCATATTAGCAGGTCATCAGTGTGTGCAGAGGAATCCACAAAGAGTGATGCATGCTTCTAGGGGCTTTATTGAAATGTAGGCCGACATCTCACAGCCTGCCGCCGGTCTGTGTACGTTTtgcataaagaaagaaacaaaacaagagcagATGGaacaaattgcttttaaattttgAACATGACACACAAGATGTATGATTGattaaaacacatgtatatatatatttttttttaatagagttGTTTGAAAGTTGACGTTTCTGTCAGCTGGATGTGCCGAGCTAATTGCGATACATTCTCCCCTGCAGACACCCCTTGGGGTCATATCACAAGCCCTTCATCGATTGcacaaacagattaaaatagTCCAGCTGTCCTGACAAAGCCGTGAAGTcctcattattatatatataagtatacacacgtgtgcgcatgtgtgtgtgggaagCACTCCGCGTGTCACAAGAactcttttctcttcttccaaACTAGTCCTTTAATGTGCAGAATGAGAAGAACGCATGGGGCAGGAGAAGGTGCAGAAGGAGACCCTGGCGGCAGGCTCTCGTTTGCTCAAACATCTCATGCACATTCGCCCGGTGCAACGCATGCATGCTGTCGGCCTCATTACAGGGGAGAGCGCGTGCCCGAAAATGCAAGAGTgcctctttatttattcattcactaAAATCGTTCTCCTTGTACGTATTGTCAGCCTCGTCTCGGTTACAGTGCGTTTTGTAACGGCTCGTTATGGAACCATATTGGTAACAATGttgcataaaaacaatgtaattggACAGTGTATTATCTGTATGCCTCAATCCTCCCTAATCATGCTCGTTTAATGGCAGTCAAGCCACACCGGCGGAGAACTAATGACTAGTGCACCTCCACAGAAACAAACgagcaacaaaaataatatattgatattgatttctGACAGTGTGACTCCATGGGGGGTCACAAAGAGCAGAAGAAGAAATTAAGACTATTTACGAAGCTCTGGTGGCCCAGTAACCACAAATAAGTAATATGCCAGTAAATGCAAAGGAATCTGTGTATTTAATGGTATATTTACACAATATGAACTAATTATTGGCCAAAAGCAAGGCATTATGGGGTGGGTTTATTGATTCAGagttataaaacaaactgtaaacagACAAATCAGCAACAGAACATGTAACAATTGAAGCGAAACCTTGAGCTAGTTAAGAATCCCCCTGACGGgacttttaaattgtatttttgattcaTTTCTTCCCCCTGGGTATTTCCATGGACACACCGTCACAGAGGTCCTGACCCCTCCTGAGATAACACTACTATCAAAGGTGACTCTATTTCTTGTTATTACgagttttaattaatgtattaaactgGAACAGGAACTGGCAAACGAGCTTGTACACCGTGTGAAAGGCCTTGGAAACACAGAGGACGGATGGCTCTGGCAATTTTTTTCGACAGGccaggttttaaaatgcatcaaacaGTCATAGCACttttacaaatcaaaatgtgtttttcgcGGCACAAGCAAATCCCACTAAAAGTGTATTTggcaaaagaaaactaaattattctGTTGTGTTAATCTGATGATCCCCTGGCTGCGTACAACGCCATCTGACCTGAATAATCTGATTAGTCAATTATTGCAGCACAGTTatctataaataaaaggaaatattatatatattaactgtGATAGCTGCAAATGTATTACATATGAAGAATACACCTGTGCTTATTCAGAGAACTTTAATTTTTAACTTCTGAATTGCGCGTACAGGTAAATTCCTGGGTGAAAGCAGCAGGGCCTTCCTGTTTTCTTTGCCGCGGGGTTGCCTCTGTGGTCTGCGGAGACACGACTGGTGCTGCAGTCTCAGGAAAGTTAAGGATTACATTAGTAGTCAGTTTGCAGCTTTCACTTCCACTATGATACGGCACAATACGCATATATCGTTGAGTATGTCTGTAGTTGGCTTTCGTCAGGATGCGAGGCTaagactaaattaaaatacaaatataatatctctTGACTTCACACAGTTAACATATGACCTAGAGTGCAGAAAAATGACCTAAAAACAGTGACAGTTGGGATTATGATGTCACACTCGACAGTGTTTGAAGTACACAAAAGCGCAACATTGGAACTGATTGCCAATACCTTTAATGCATTCggtgaaacaaaaaaaggcattttttgaCTGCAGGTGCACTGATCCTAACCAGCGTTATCACTATCAGATACCCCATAACGTATTACTTTAGAGCCAATGGATTGGTGGGAGGAAAGCACTGCGAGGAGACGACAAACAGCGCTCGCGTGGAAATACTCTGGAACAGTGTCTTTACGCTGAACAAAACATAAAGGCACCATTGATATTTCTCTCCATTGAAATACTGTCAATTTTGCTACATATGGCACATTCATTCAGAACTCAAAACACGTTTACATACATAGAATTTATAAAAGACTTTATTCACTActgctaaaataaaatagtttaatttaaagtatttttttttcagtttttctttcttttttttaatttatctatTATTTTCCTGGAATacttcatttatataaaataaaggtttacCGGTGACtctatgtataataataattattattattatgaatattattattattattttcgaTCTATACAGCAATTGGATCTTGATTAGCTATTACACTGGACAGCCGAGCTGGCAGATCCTCCGACGCAGACAGCCGGTGGCCCGTGTTAGTCCTGCCCCCCTCGGCCGGCCTGTACCCGGGGGTCGTCTCCAGTGCGGCAGCGAGGGGGTTCTGTAGGCTGAGGAAGGGCGTGTCCTCCCCGACGCGCTCGTCTTCCGTCTCGCTGCCCGAACTGCTGCTCTCCGTGCTGCTGTCGCTCTCGCTCTCCGGCTGCTGGGGAACGTGGCCATTGAGCTTTGTTCTTTTCACCCGCCGACCGTTGGTGAGTTTTTTAGCGGGCTGCGGCGCGGTCGGCTCGTACTCCTGGGTGGTCTCATATTCGTCGTCCTCCGCGAGCCGCAGGGGGCTGGGTGGGGGGCTGTGCGCCTCGTGGCCGTGGTTGTAGTGGGCGGACTGGCGCTGGTACTGGCTGGGGAGGAGCTCCTGCTTCTTGTCCCGCGGCCGGGGTGGCGTCACCAGCAGGAGGGGGCGCTCCTCCTCCCCCAGGGGGCTGACGGCCACCGAGGGGATGGATGTTGCCAGGCTGGACATTGGCGGAGACATCTCCGAGGGTGGGGACTTCGGGGACATGGGCGGGCCCGGGTCCACTGGAGACATGCGGTTGGGTGTCGTCATGGCCGACACGTACCTTTGGAGGACAAACAAACAGGGGAGAAGGGAAAGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102483 lncRNA upstream 261477 37825697 ~ 37825916 (+) True G82156
TU102464 lncRNA upstream 343662 37743525 ~ 37743731 (+) True G82140
TU102398 lncRNA upstream 426238 37658307 ~ 37661155 (+) True G82092
TU102369 lncRNA upstream 530792 37554453 ~ 37556601 (+) True G82063
TU102362 lncRNA upstream 554249 37526083 ~ 37533144 (+) True G82057
TU102584 lncRNA downstream 1907 38095621 ~ 38095902 (+) True G82229
TU102585 lncRNA downstream 3312 38097026 ~ 38097286 (+) True G82230
TU102586 lncRNA downstream 16535 38110249 ~ 38110555 (+) True G82231
TU102589 lncRNA downstream 62683 38156397 ~ 38156598 (+) True G82234
TU102594 lncRNA downstream 153307 38247021 ~ 38252010 (+) True AMCG00010648
AMCG00010643 mRNA upstream 36446 38043745 ~ 38050947 (+) True AMCG00010643
AMCG00010644 mRNA upstream 62064 38010059 ~ 38025329 (+) True AMCG00010644
AMCG00010641 mRNA upstream 115713 37960752 ~ 37971680 (+) True AMCG00010641
AMCG00010636 mRNA upstream 213908 37865062 ~ 37873485 (+) True AMCG00010636
AMCG00010635 mRNA upstream 278146 37795529 ~ 37809247 (+) True AMCG00010635
AMCG00010648 mRNA downstream 154373 38248087 ~ 38251652 (+) False AMCG00010648
AMCG00010650 mRNA downstream 183603 38277317 ~ 38278369 (+) True AMCG00010650
AMCG00010652 mRNA downstream 212540 38306254 ~ 38317804 (+) True AMCG00010652
AMCG00010653 mRNA downstream 231971 38325685 ~ 38339014 (+) True AMCG00010653
AMCG00010655 mRNA downstream 254564 38348278 ~ 38353962 (+) True AMCG00010655
TU102525 other upstream 199230 37886220 ~ 37888163 (+) True G82192
TU102276 other upstream 823344 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 836224 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 836224 37235766 ~ 37251169 (+) False G81971
TU102028 other upstream 1993017 36091539 ~ 36094376 (+) False AMCG00010585
TU102591 other downstream 75442 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 153307 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 543789 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 688365 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other downstream 688365 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile