RNA id: TU102584


Basic Information

Item Value
RNA id TU102584
length 282
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G82229
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38095621 ~ 38095902 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGGTTTTATGAGCATTTAAAGAGGACACTACCAACATGGCCAGCAGCACCGCAGCCCTGAGGAGTGGCATCAGTACCTCTCGCTGTGGGGGGAGTCTTTGTAGGAGTCGGGCGTGTCTCTGGAGCTTTTCAGGTAGGAACTGAGATCCCGTGCACACCCTGTGGCGTTGAGCCTCCCCCGGTGACTCAGCGGAGTGGTGTGTCGACTGGTCTCCATCGATGACGTCATCAGCACCGAGCGGCTCTCTGACACCAGGCTCTCGCTCGGACCGTTGCTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102579 lncRNA upstream 1907 38087393 ~ 38093714 (+) True G82228
TU102581 lncRNA upstream 5081 38087393 ~ 38090540 (+) False G82228
TU102483 lncRNA upstream 269705 37825697 ~ 37825916 (+) True G82156
TU102464 lncRNA upstream 351890 37743525 ~ 37743731 (+) True G82140
TU102398 lncRNA upstream 434466 37658307 ~ 37661155 (+) True G82092
TU102585 lncRNA downstream 1124 38097026 ~ 38097286 (+) True G82230
TU102586 lncRNA downstream 14347 38110249 ~ 38110555 (+) True G82231
TU102589 lncRNA downstream 60495 38156397 ~ 38156598 (+) True G82234
TU102594 lncRNA downstream 151119 38247021 ~ 38252010 (+) True AMCG00010648
TU102610 lncRNA downstream 189677 38285579 ~ 38287528 (+) True G82250
AMCG00010643 mRNA upstream 44674 38043745 ~ 38050947 (+) True AMCG00010643
AMCG00010644 mRNA upstream 70292 38010059 ~ 38025329 (+) True AMCG00010644
AMCG00010641 mRNA upstream 123941 37960752 ~ 37971680 (+) True AMCG00010641
AMCG00010636 mRNA upstream 222136 37865062 ~ 37873485 (+) True AMCG00010636
AMCG00010635 mRNA upstream 286374 37795529 ~ 37809247 (+) True AMCG00010635
AMCG00010648 mRNA downstream 152185 38248087 ~ 38251652 (+) False AMCG00010648
AMCG00010650 mRNA downstream 181415 38277317 ~ 38278369 (+) True AMCG00010650
AMCG00010652 mRNA downstream 210352 38306254 ~ 38317804 (+) True AMCG00010652
AMCG00010653 mRNA downstream 229783 38325685 ~ 38339014 (+) True AMCG00010653
AMCG00010655 mRNA downstream 252376 38348278 ~ 38353962 (+) True AMCG00010655
TU102525 other upstream 207458 37886220 ~ 37888163 (+) True G82192
TU102276 other upstream 831572 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 844452 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 844452 37235766 ~ 37251169 (+) False G81971
TU102028 other upstream 2001245 36091539 ~ 36094376 (+) False AMCG00010585
TU102591 other downstream 73254 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 151119 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 541601 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 686177 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other downstream 686177 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile