RNA id: TU102586


Basic Information

Item Value
RNA id TU102586
length 307
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G82231
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38110249 ~ 38110555 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATAAGATATTGCATCAGAGAACGAACAGGGAGATGGATTGTATAAGGAGACTAATGATGAGACCACTTCAATTGAACCTGCAGCCTAAtttaatcaaaaacagagagaatATTTCCTATCTCGTCCAGCAGGAGAAGCCTGCCTCGATTGAGTCAGATGGGCTCCTACCTGCACAGGTATTTGGTGCTGCCGGGTATGGCGTCCAGGGTGAAGCACTCCCCTCCGTTGACACAATAGTTCTTCTTGCTGTCACTGCATTTGGTGACATGGCTTGTTCTCACTGATGGAGGCGTGCTGGTGGGCACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102585 lncRNA upstream 12963 38097026 ~ 38097286 (+) True G82230
TU102584 lncRNA upstream 14347 38095621 ~ 38095902 (+) True G82229
TU102579 lncRNA upstream 16535 38087393 ~ 38093714 (+) True G82228
TU102581 lncRNA upstream 19709 38087393 ~ 38090540 (+) False G82228
TU102483 lncRNA upstream 284333 37825697 ~ 37825916 (+) True G82156
TU102589 lncRNA downstream 45842 38156397 ~ 38156598 (+) True G82234
TU102594 lncRNA downstream 136466 38247021 ~ 38252010 (+) True AMCG00010648
TU102610 lncRNA downstream 175024 38285579 ~ 38287528 (+) True G82250
TU102627 lncRNA downstream 241664 38352219 ~ 38353833 (+) False AMCG00010655
TU102651 lncRNA downstream 257114 38367669 ~ 38370042 (+) True AMCG00010656
AMCG00010643 mRNA upstream 59302 38043745 ~ 38050947 (+) True AMCG00010643
AMCG00010644 mRNA upstream 84920 38010059 ~ 38025329 (+) True AMCG00010644
AMCG00010641 mRNA upstream 138569 37960752 ~ 37971680 (+) True AMCG00010641
AMCG00010636 mRNA upstream 236764 37865062 ~ 37873485 (+) True AMCG00010636
AMCG00010635 mRNA upstream 301002 37795529 ~ 37809247 (+) True AMCG00010635
AMCG00010648 mRNA downstream 137532 38248087 ~ 38251652 (+) False AMCG00010648
AMCG00010650 mRNA downstream 166762 38277317 ~ 38278369 (+) True AMCG00010650
AMCG00010652 mRNA downstream 195699 38306254 ~ 38317804 (+) True AMCG00010652
AMCG00010653 mRNA downstream 215130 38325685 ~ 38339014 (+) True AMCG00010653
AMCG00010655 mRNA downstream 237723 38348278 ~ 38353962 (+) True AMCG00010655
TU102525 other upstream 222086 37886220 ~ 37888163 (+) True G82192
TU102276 other upstream 846200 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 859080 37230428 ~ 37251169 (+) True G81971
TU102257 other upstream 859080 37235766 ~ 37251169 (+) False G81971
TU102028 other upstream 2015873 36091539 ~ 36094376 (+) False AMCG00010585
TU102591 other downstream 58601 38169156 ~ 38169531 (+) True G82236
TU102593 other downstream 136466 38247021 ~ 38252010 (+) False AMCG00010648
TU102794 other downstream 526948 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 671524 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other downstream 671524 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile