RNA id: TU102610


Basic Information

Item Value
RNA id TU102610
length 1950
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G82250
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38285579 ~ 38287528 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatttatatagcaatTCCAATGCAATGACCCGGTCCCGATGGATCACACGCTTTTGCTTGTCTGGGAAGTGATTGGTTTTACAAGAGAGCTGGAAGAATTAGCAGGCTAAGAGAATGAGTCTGCTTATTCAAATCACTCGCCAGGCTGCTGAAGTGAAAGTCTATTCTCGTGTCTGCTAGCTGATCGCAACAGGTTTCCACCTGCATCATGCAGAGAGGATTTGCACTCAGTTTGCTCTGCTTTTCCAGTTCAAGGTTTAAAGCTGTGATCTGAGTATTGTATGTATTCTCAGAAGCCAGGGCTACACCTACACAGAAGACATCCTTTGTTGTGCCCTCATGTTTGTggtagtattttaaatgttttgctcaCTCAACAAAAATgggttattgttttgtgtgtgtgtttaactctTACAATTTACCTCTATAAATTGTAACCTAAGGCTCACAGTCTAGCATATCCCATTTACCTGAAAAATCCACAacagagtttttgtttttgacagaaCAAGTCATTAAAAATGTCTGAATTTATTGCCGGGACAGGAGTGCTTTGACAAGCTGCTGTCGTGTAGAAAACACATTTCCCCACCAAGAGCCTTATTGCCACGACTTTGAGTCGATTGTAACATTTAAGTTGGTTTGTGAGATGTGCATTTCTTTAATAATGCTTTGAGTGGGGACTGATGTGGATATTTCCCGAACAGTGCAAGTCAATTACAGACAGGACGAAAAGCATCGGAGAGATACTGCTCCTCTTCTTCACCGAGCAGAACAGAGTGAATGTCTGGACGGCTGTCTTAACATCATAAAAACGTCATTCAAACCTCATCAGAACGCAGTACAATCAGTTAAGGTTAAAACGAATGGGATGGCAAGGAGTTTGACCTGTTTAAAACGAGTGCagactttactttttaaagccTTAGGccttttttcaaaaacaaacctgtATCTGAGCTGATAGTAATGTAGATAGCTAGCTGTATAAGTATGGGTATCGAAGACGCTTCCtttgctggtttgttttccCTTTGCTTTGCGTTTGTCACGGCTTTGTTGCAACAGTGGGAATTTAGAAATATAAGTGTttgataatgataaaaaaaaatggtggtgAAAAAGAGATGTTTAAGTGTATTTTGGGGTTAAATGATTGTGTACTACATTAGCTTGTCCTCTTATAGTCCTAGAAAATATTAGAAGGCTTAAACGAGAAAGCAATTGTTCTGTAAACTAGCACTTTCTttaatgtgtgtactgtattagGTCATGTTCTACATGTTTGGTACTGTATGAATATTCATTAATTGCCTTGTAGTGTTTGTTGGTTGCAACATGTAGGGTAATTTTCTCCAAAATTcaaagtttttacattttgcatgtcAACAGTTAGTCcggtccaaaaaaaaaacagaaaaaatcgGTGCTACATTCTCAGATATAAAGGTGCTTATATGGACCCTAACTGCATGCATGCTGAcgaaagaaaaagattaaaaaaaaaaaaaaaagacttgaaaCTGGACATTTTGTTCACTCGCACACATAGTGGGAAAGTGACTTTGTGGGGCGCCTGCGCAGCTCCGCAGTCGATCCATCCATTCCGTTCCTTACAGCTCCCAAAACAACATTATCCACATCTGCGCAAGATCAGTGTGCTTTCTTACACACACGCTCACGACCGGTGCAGCGGAAagacttttgtattttgcaatgtgtgtgtgtggggggtgtaaCTTAATTACCGTAGAAGTGCTCTTTGATCTTCGAAGACGAACGCCATCATTCCATCATtgctcatttaaaacaaaagaagtCAAGAGAGCAGGTAGCTATGGCCGCAGATGTATTGTTTGGTGGGGGGAGGAACATACATTTCTTATGGTAGTATTTGTCCGCacatccattattttattttattttattttattttattgttcaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102594 lncRNA upstream 33569 38247021 ~ 38252010 (+) True AMCG00010648
TU102589 lncRNA upstream 128981 38156397 ~ 38156598 (+) True G82234
TU102586 lncRNA upstream 175024 38110249 ~ 38110555 (+) True G82231
TU102585 lncRNA upstream 188293 38097026 ~ 38097286 (+) True G82230
TU102584 lncRNA upstream 189677 38095621 ~ 38095902 (+) True G82229
TU102627 lncRNA downstream 64691 38352219 ~ 38353833 (+) False AMCG00010655
TU102651 lncRNA downstream 80141 38367669 ~ 38370042 (+) True AMCG00010656
TU102649 lncRNA downstream 135952 38423480 ~ 38425049 (+) True G82285
TU102751 lncRNA downstream 187322 38474850 ~ 38475108 (+) True G82338
TU102752 lncRNA downstream 189691 38477219 ~ 38483324 (+) True G82339
AMCG00010650 mRNA upstream 7210 38277317 ~ 38278369 (+) True AMCG00010650
AMCG00010648 mRNA upstream 33927 38248087 ~ 38251652 (+) False AMCG00010648
AMCG00010643 mRNA upstream 234632 38043745 ~ 38050947 (+) True AMCG00010643
AMCG00010644 mRNA upstream 260250 38010059 ~ 38025329 (+) True AMCG00010644
AMCG00010641 mRNA upstream 313899 37960752 ~ 37971680 (+) True AMCG00010641
AMCG00010652 mRNA downstream 18726 38306254 ~ 38317804 (+) True AMCG00010652
AMCG00010653 mRNA downstream 38157 38325685 ~ 38339014 (+) True AMCG00010653
AMCG00010655 mRNA downstream 60750 38348278 ~ 38353962 (+) True AMCG00010655
AMCG00010656 mRNA downstream 82496 38370024 ~ 38372651 (+) False AMCG00010656
AMCG00010654 mRNA downstream 87931 38375459 ~ 38378170 (+) True AMCG00010654
TU102593 other upstream 33569 38247021 ~ 38252010 (+) False AMCG00010648
TU102591 other upstream 116048 38169156 ~ 38169531 (+) True G82236
TU102525 other upstream 397416 37886220 ~ 37888163 (+) True G82192
TU102276 other upstream 1021530 37261324 ~ 37264049 (+) True G81987
TU102256 other upstream 1034410 37230428 ~ 37251169 (+) True G81971
TU102794 other downstream 349975 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 494551 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other downstream 494551 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other downstream 494551 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other downstream 494551 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile