RNA id: TU102752


Basic Information

Item Value
RNA id TU102752
length 4549
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G82339
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38477219 ~ 38483324 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGAGACCCAAAAACATAAGGGTCTGTCAGATACAAAGCAGAGAAACCTACACTGGACACAAGCAAATCAAAGTTCAGAGTTCATTCATGTTGACTTTCCAATAAAGCTACAAAGGACAATGAAATCATAAAAAACTGGGACACATTGACCCAAACCCTGAGAAACACTAAATATTTGGTCTTCTTATATCAAACTTCCCCAATAGACAACGGCTGGCTGCATTCGGCACGTTGTCCTGTAAAACCCCATCTGTATGCTTGCATTAAACCGGACAACTCAAACTCAACAGATAAAATTACTCTTTGGCGATTCGTACGTCATGACTGTTGAGGGCTCTGACCTGTACTGCCTTGAAATGAAGTTCACTTTAACTCAAACCTTTtacagagacagaaaacagcatTCCAGAAATGCCACGAGTATGACATTTTCATCCATCTTGATCAGGGCAAAGGCCTTccaataagtaaaaacaaataaaactaaatctgtatgaaacaacgttgtttttGGAGGGGGACCATTCCCAGGTAATTACGGCCGTTCGATCTAGGAGCTCTAGAATGTGAGGGGGGTGGGGACGGAGATTCAGGAAACAACTGCTGAGGGCGTTTCACTTTTATTCACATATTTACAACATCTGCCACCCAAGTGTTGAGAAAGATCTTATGCATTAACAggaatgtctttaaaataatgacaagaaaatgaaataaagcatgtacaacccccccctcccccgatGCGGCGCGCACCCCCTCTGTCCCGGCGGGGGGGGCTGAGTCCAGACCCACAGCCGCACTAGCTGCTGTCCGAGGAGGCGCTGGAGCTCTCTGACGAGGTGCGGCTGCGCTTCTTGCTCTTCTTGCCCTCCTTCTTGTGTCGCTTCTCCTTCTTGTGCTTCTTCTCCCGCCTGGTTTTCTTCTTGTGGGATTTCGGCTTCTTCCTCCTGGGCTCCCCCTCTTCGTCGCTGGACGTGCACGACCTTTTCTTAACTTTTTGTGGGAAGATTTTTCCTTGCTTTTCTTCTTGGGATGTCCTTTCTTCACGTCTTCTGATGAACCCTTGCTGGCGGCGCCGGGCTGCACTCTCTCGCTGTCCGGGTCGCCCTGCGGCTCCTCCTCGCTCTCCTCGCTGCTGGTGCTGCTCACGTCCAGAACAATGTCCTTCCCAGGATCCACCCGCACGAAGTTACGGCACTCGAACGTCAAGTGGCCAGGGTATCCACATTTCTTGCATCCTGCTCTAATATTATCCTTGTTCGGACctatgaaaaaaagaaaaagattgaaTGTGAAACGATGCATTTTTCTCAGAACGTCTCAGTCTCCGAATGAAAAGCTTTCCTTTAtgacaaaaagaaacattttccaaTAGTACTTAGTCAATAAAGGGGACTTAACACGACATCCCACGAGGGTAATGAACCTGCCCGAGACGGAGAAAGAGAGCGGACGGGAAATTCCTGTCTGATTGAATTCCAGTTGCTATAGAGATGTGCTACCCAGACATTTTAgggacagaaaaataataagaacaataattaaaaaaacagtccaGAAGAGTCTGGGTCGAAATCAAATTTTCACATATCAGTTGTAGCCTTTTTGAACCACTACCCAATCCTCGCACCCAGGGCGACCACAGGCACTAAGGAAATCTTCCAATCCATATCAGTACATTtgccaaaaaagcaaaaacatctATGACAGAAACAGAAGGCTTTCCAAACACATTCAGAATAGTGATCCAAGCGCACGCCACATCTATTTACTTATtacctatatatttaaataagacgAGGCTTTggactgtattttatattattttgcgATTGATTGACAGACATATGCAACTATGCCATTATGTTGTTATGTGTTTTCATGTATCCACACTTGCTTCAAAAAGAATATCCCTTGGGCATAATAAAGTTGATCTAATCTAAAGAAATCGAATCAGTTTACAGAAGAAACTATCTGTGTGACAAAGGGAAAGGGCTCTGAGGGCTCAGCTGGCAGTAATGCATGTTAAAGATACCAAGAGTGCTGTTACTACCAGGGATAGAAGaatattgtaaaattaataGAGCTCTGATGAAAAGaaacagtttaaaacacaacacagtttattaatttgacaaatcattaaaaaatgaatccaTAGTATTCCACCGTTGTACCTCATTATCTATCCGTGTAATTATTTACTGCCTTTTGCTTCTCTAGGGTAGGGGTTCCCAAATCAGTCCTGGAGGatgccctgtcctgctggtttttgttccagctgtgatcttaattacataatgtagccttgcattggattgttagttcaattaaggtttcaattaagcaTTTAAGATCTCATTTGGAACAAGAACCATCAGGACAGGGGGTCCACCAGGACTGATTCGGGAccgattcgcacacactactctgctccctccactggctcccgatagcggcacacattcagttcaagacactgaccctcacctaccgctgtctcgaccccactgcaccaagctaccttcagacactcgtctctccatacatcccctccagaccactgcgctcctccagcgccagaagactaactctgcctcctctccactctccctcctccagagccgctccttctcatccctgaaccctatgtggtggaacaacctgcccacagcagagtccctgacctccttccggcgcttactcaagacacatctcttcagacagtacttataatattagtccttttaatccccttaagatagcacttcacagttttattatgcttcttgcgtttttgattgttttgctccttgctccctttcccacagcccttgactgtgactctacatcttgacaggacttagcttttaccgtccaggatgtaggacctcacttactttacttgcctgtgtaaattggaagttgtaaaatgtattatattttgaattgctatgttttatgtaaactgaatttgtaatgtttgatgcctttacctaactgtatttttgcacttatgttgtaagttgccctggataagggcatctgacaagaaataaaaattaaaataataataataataataataataataataatctagggTAGGGGTTCTTAACCTGGGGTCCATGGACAATcatataaatgattaaaagcAGCTCCCAAATAACAATTGATCATCACAAATCCAGGTGTTCCAGAGGTTCTGATAACTGGGAGCTCACATGGATTTGTTCTTTTTCCGAATTTGActtattgttttcctcctgcGATGATCACTCCAGAGAGGCCGCTGACGTTTCAAAGTTACAGATCATCAAAACTAAGTCCTGTAACCGGCTGTTGCAGCCCACGCTCTGCTCCTCGGTCCCCTGCcctggcagcagcagcaaccaTCTCCATGAGCGCAgagatgctttttaaaaaggaaaaatcttAGCCGCGCTGGACTTGATCGGTTTCCTGGTGGAGCAGAGGAAAGTTTTTGAAAATAACTATCCCGAGGACTTGTTTCCTTACTTTGTACAGGTGCCTGCCATGGTCTATCTTGGGTGGGGGTCTGGAGGGGTACGGAAAGGTTAAGAAGCCCTGCTCTATGTGTCCAAGGAAAGGGTTATTTCCTCAAAGAATGAAAgccaaaatgtgaaaaaacacacacaagtacatTCCCATGACGGGTGTTAAAATCCCTCATGAATGAACTGAACACAATCTATCCAGCCCAGTGGTTCTCAATGCTGGGGAGCCCCTGCTTTCTGCTCTAGCCGAGCTCTCAATCACTTCATTACTAGTAGAGTACTTAAGGGAGccctaattgaactaattagCCTAACCTGAGatcttacattattttaaacagttgtagtTTTCATGTTCAGTATGAAACTATAGTggaacttgaaatctccaacttttattaaactacacaatttaaaaagtcaaacgTCGCAAATCAGGAattcaattaaggaatcaattaagtGAGAGCTCAGCTGAGCGAAAGCCCCGGGCAGGGGGTGTCTCCTCCCATACACCGGACACTTTCACGAGTCGACCACTGTTTCACACACGATGCGCACAACGCACGGCCAGGTCTGTGGCTGTAAGATGAAGCCACATCAgtctctgtccgtctgtccgcCGTGGACCTCATGTCCGATCTCTTTAACGTCGCCAAATCGCCGAGTGCATTGAGATCGAGATTGAGTCGGTTTCCCCGGCGGGTCTGGACACGTTTATAACCCGGGCAGGAAGCGTGAATTAACCGTCCAGAGCCGCGCAGGGAAACCGCTCACATCCCCATCCAGCCCTCCGGACGTTTCTAGCACATTCTCTTAGATGCGCTGATTCCCACCCGCGTTTCGCGCATGTATGTTTGCACTCTTAGCTAATTTCCGCACAAACGTATTACTGTTGTTTCAATCGTGACATAAAAACCTGGTGCCGCCATGCCGAGCGCCTCCGTTAAAGCCCAGAGTCGATGTTCGGCTCAGTTCGGTGCGAAACGCATTCaaacactttcaaaacttccagCAAGGGTCCATCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102751 lncRNA upstream 2111 38474850 ~ 38475108 (+) True G82338
TU102649 lncRNA upstream 52170 38423480 ~ 38425049 (+) True G82285
TU102651 lncRNA upstream 107177 38367669 ~ 38370042 (+) True AMCG00010656
TU102627 lncRNA upstream 123386 38352219 ~ 38353833 (+) False AMCG00010655
TU102610 lncRNA upstream 189691 38285579 ~ 38287528 (+) True G82250
TU102776 lncRNA downstream 75142 38558466 ~ 38564283 (+) True G82353
TU102860 lncRNA downstream 309001 38792325 ~ 38797886 (+) False AMCG00010687
TU102926 lncRNA downstream 543760 39027084 ~ 39027418 (+) True G82468
TU102954 lncRNA downstream 619596 39102920 ~ 39103266 (+) True G82488
TU102961 lncRNA downstream 668483 39151807 ~ 39152153 (+) True G82495
AMCG00010661 mRNA upstream 3058 38468372 ~ 38474161 (+) True AMCG00010661
AMCG00010660 mRNA upstream 18283 38447303 ~ 38458936 (+) True AMCG00010660
AMCG00010654 mRNA upstream 99049 38375459 ~ 38378170 (+) True AMCG00010654
AMCG00010656 mRNA upstream 104568 38370024 ~ 38372651 (+) False AMCG00010656
AMCG00010655 mRNA upstream 123257 38348278 ~ 38353962 (+) True AMCG00010655
AMCG00010670 mRNA downstream 797 38484121 ~ 38487527 (+) True AMCG00010670
AMCG00010671 mRNA downstream 4365 38487689 ~ 38488286 (+) True AMCG00010671
AMCG00010669 mRNA downstream 32613 38515937 ~ 38534810 (+) True AMCG00010669
AMCG00010672 mRNA downstream 148480 38631804 ~ 38633945 (+) True AMCG00010672
AMCG00010681 mRNA downstream 153152 38636476 ~ 38638532 (+) False AMCG00010681
TU102593 other upstream 225209 38247021 ~ 38252010 (+) False AMCG00010648
TU102591 other upstream 307688 38169156 ~ 38169531 (+) True G82236
TU102525 other upstream 589056 37886220 ~ 37888163 (+) True G82192
TU102276 other upstream 1213170 37261324 ~ 37264049 (+) True G81987
TU102257 other upstream 1226050 37235766 ~ 37251169 (+) False G81971
TU102794 other downstream 154179 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 298755 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other downstream 298755 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other downstream 298755 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other downstream 298755 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile