RNA id: TU102776


Basic Information

Item Value
RNA id TU102776
length 5785
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G82353
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 38558466 ~ 38564283 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGGCCACAGGACTGCCTCTTTCCAAAGGGCAGCAGGGCAGCTGTCCTCACATTATTTCAGCAATACGGGGGCACCGTCTTGTCTTGTAGGCCTGGATTAAGAATAACATGTACAAGATGCAGACTGCTATGGACTGATTCCCCAGGTACATGATCCCCTACCCCACGTCACGTTCAATACAGGAGCAAGACATACGACAGCAGGCCAAggtgaaagtatttattttacacgGGAGATAAACCTTAGTTTCCAACGTATTTATCGGCACTATCTTTTCAATCTTTACAACTTTTTAACTTTTAGCATATTGTTATAATACAGATTTTCGACAGCATTCCATATGCCTTTGACGGCACCGATCGGTCTGCCATTCCCTCGCTGGGACATGTGAGGAACAGACCACTTTAAACACCAGGGAACACAGCCAGTCGCTTCAGAAGCTGCACTTTTATTGTTCTAATGTATTGGAGGGTTAAAACAGGGTTGTGTTGTGGAATTTCACTGCATTTTCACTAATCTAATCTTCAtgcagtgaaataaatgtagaaCAAGTGTCATGAAACATGGCAATAAATTAGCATATaatttacaaatggaaaaaaaaaaattagtaaCAGTGTACCAACATTaatactgaatataaaatataagcaactaatcacaataaaatatatatacacacatatatatatattgtttttgtttctgctggTAAAGTAGAGCAATGTGACATTCACATCATGTGACAGCAGAAAGTTATAGTGTGGAATGGTCTGTGATGGGGGGAGTCTCGTAGTTCAAACAGTCCATGACGGGGGGGAAAGTCTTGTTCTGCAGGCTCTTTGACAACATTTCCAGCTTTAGAAAagtattgtattgatttatttatttcaattaacaaaaacaacatacgATCTTCAGTGTCTGAGGCCTGTGCACACATGGGGTTGGTTTATTGTTCCATGGTGTAGTTTATGATGAAAGGTATCGGCTGAAATCGCACCGGTGGCTACAGAGTAGCAGcagcaaaaaacaacactatgGTGGTGTGATCAGTTTCTTAACGATGAGTCATGATGCTCATCGATCAGGtcccatcttttttttttttttaagaaattgttttattgtacctttacatctatctatctatctatctatctatctatataaatatgtgtctgtgtggtgttCCCTTTTCACAAAGTGATTCCAAGATTGTGCATCACATCTTCCTAATCACTGAAGCCCCCTTGAGGAGGGGGCGTTATAGAACGTAGCACCACTCGGAAAGACGAGGGGAGAAACGCATCTGTGGACACGGTCTTCTCAATGTCGATACCCAGTGTGAGGTAAAGAGAAGGTGGTCACTGATTCACTTAACAGACAAAGTCTCTCAAAAGTCACATGAGCTACTGTTTGAGCCCCAGGCAGATCGACTGACTGTCCTGTCAGCGGGGCAACACGAAGACTGCAGGCCTCCACTTCTCCTGTATCCCTCCACATGAGGCGGGGCAGGAGAGCACCGAGGTAGGCTGTGCATTCCCTCTGAAGCGATGTGCGGAAGGgttttttttactgtacagCCATTATCTGTACATAAAGCACCATCAGCGTTTGTTTGATTCGTCCTACGATTCCATATCTGCACTCACCATGACAGCGTGGCCGCGAGACAGAGCGCATCCCTTTGCAGGAGAGAGCAAAGCAAACACATTGTCCAGAGGTAGAAGTAATGGGCTGGTTCTCAGGAACGCATCCTGTGAGGGCCTGCAGGCGTCGCGATGGTCCTGCACAGGGGGTTCAAGCACTGCTCCTTGATTCCTCAGCACAGGTACATCCATGGTTTGTTACCGTCACAAACATGAGCTCTTAATGGATCAATATGATGATAATGCAACATTTCAAAGGACAGTCAAACCATCTGGCAGGCAAAATCTTTTGCAAGGTTCCCTGCTTTAATATCATAATTGTAACCATCCCCTCCACTAGTCCCGTTCATGCACAGTGACAGCGTTGACCAGTTTAATGGGCCTGTTTTGGATCAATCATATTTTGTCCTTTAAATGAACTAATGATGTGTTAGTTTTCTTCTGAAGCAATGACTTGCAGTAGTGTTATCACTGGACTCAGCTGCGGAATAAGAAAGGACCAGCTGGtcctctttgttttcttctattgACTTTGTGTCCACAGTCCGTCATTCAACAGAGTTTCAGCTAAGTACAGTGTTTAAGCTCCTGTGCATTTCACACTTACCACAacctgtatataataaatattaatattcttaGCCAGGCTAAAGCACCCTCTCTCATTCACATTAGTTCTTTATCTGATAACACTTTTGACTCACTctaaccactttttttttttttttttttagcaaataGTGAGCAACATTCAATTTGAAGACATCTGTATTTGATCACGTATGTAcactgcacaaaaacacaatgaagcatattgttttaaaagtgccattaaaataatttgttttacatttaacttatatatacacatacatatatacacatgcatatatatacatgcatatacacacacacatatatatatgcatatatattatatattatacacaccccccctatagaaagtctacacaacgctcaacattttcacattctgttgccttatagcctggaatttaaatgcaataaaatgtattgtttttaattttcatttaaaaaaatattctggaaatttgtaggaaattaaaaataaaaacttgagtTTGGATAAGTGTGCACctcccttgtaatagcaatcttAAATTAACTCGTGTAAGCAGTCATCTTCAAAATCAAACACCAAGTGgtgttaaattataataattgacaatttcaggatacattcagcagttcctgtaggttccctcagctgggtagtgcatttcaaagcaaagactcaaccatgagcaccaaggagctctGGGACAATGTTGTTGAAAATCAAATCTGGTGatgggttttaaaaaaaaaaaaaagcattgaataTCTCTTGGAGGACAGTCAAAATGATTATTAAGAGGTGGAAGGTGTTTGgcactgcctagatcaggctgtccctctAAACTTGATGACTAAGCAAGAAGGAGACCGATCAGAGAGTCTTCCAAGAggtcaatggcaactttgcaaaaCTACAGGCTATTATGACGAAGACTGGGGCACTTGATAGGATAGAAGGGATAATTAATGGAGTGAAGTACAGAAAAGTACTTGAGGAAagcctgctgccctctgcaagaaagttgaaactgggatggaagttcacttttcagcaggacaatgacccaaagcacacagccaaaaatgtccttgagtggacCAGTCAGAGCCCTGAACTAAACccaactgaaaatgtgtggcatgacttgaggattgctgtccatcaacgctccccaaggaactgGACAAagtttgaacagttttgtttggaagaatggtcaaatattgcccaATCTAGGTGTGTAAAACTGGTAAAGACCCAACACATAAAGGAGCTTCcaccaggggtgggggggaaacttatccaattataatttttcaggtttctatttttaatataattttttcataATAACTTTTCCCTCAACGGTAATGGattatggtgtgtagataagtataaaaatttatttaaatacatgaaactctagactttctataggcactgtacatatataatatatacacatacatacacgtatatatgtatatacttatataaaacacatacagacgaatatatgtatattttcttttccattgcACTAGGATAAAAAGAGGAGGAGCTGaacaacaaaatgcacattCATCAGGAAACTGAAGTGTtcaagtactgtatataatctGGTAAAGACTGACTGACATGATCCCAAACCAGCACAGACGCCCTCCAGCCCCCCGCTGACCTCGGGGTTTTCTCATTCAAAACCATGAATGCCAGGAAACATTCTGCTGGAGTCCAAGCTTCTTGTAAGATCTTGCTTGAGGAATCAAAGGAGTGCTGTGTACGGCTATCGGCagctgttttcagtttgttttgagttttctttttcttttaagctGCTCTAAAGTAGGTCTGATTCGTATTCTCTCCCCTAACTTTTAAACAAAAGGTTTATTCTttggctgtgtctgtgtgccctTAAGTGGCACAGACAATAACTGTGCCTGCTTATTAAAACAGGTGTCTCTCCTGTCTAAACAAAGAAACATCTGGAACCCCTTTCTTTAATTCGGCTATTTTTCCCCCTCCACAGCACAGCTTAAAGGTGAGTCTGTTAACACACTGGAGCAGCCAGTGCTTGTAAGCCATGTCTCTAGCATGGTGGTCTTCTAGCCAGGAGAAGCGTCTCTAAAAGCCTGTGTGGTCGTGGTCACTCCGTAGCGAGTGACGCCAACACGGGGGGCGAGGAGGGTGGTGCGACGTGAGCCTCAGGCACCGGCACACTTCCACCGCGCTGGAAAAGCCTCCGAATGTTAAATGCCACCCACCGCTTCACCCTGTCTGCTGCATGAAGGTCAAGCacttttttctggttttatgcctttttttttttttcatctttccCCTACTGAATTAAAAACCCCACATCAACAAACTGGTGTTAAAGCCATTACATAGGATACGATCCAGGTATTTGTGTCTAAGCATGCCGAAGGGAGACGGGGCTTTGAGTCACCCTAGTAGCCCAACCTCCCCATTTAATAGAGACAAGAGCAGTTTTCTTATTATGGCTCACAATGGTGTACTTAGGAGATGCATAAATGCCCCCCCCACATGGTAGATGGAATGACTTTTTGAGCTTGTGTTTCACTGGAGCACACTGTCAGACTCACAATGCCTTCACTATAGATTTGACACCTGCCTGGGTGCTGCTAAAATGTGTCATAATCCTTTGATGAAGACAATTGATCAGGAGCATCCAAAGACTGGTTACTCACGTTCATGGATTTACCGTTGGACAAGAAAGGGCAAGTCTGTTTTAAAACGGGAGAAGCGAAGGGGATGGATACTGTGCACACAGCCCTGCACGTGGCGCTAAAGCCTGTGTGTGGATTTCACATGGACCGGTCCAGTCCGGTCCACTGGCGGCATCACTCTGTTTCTGGGATGAGCAGTTACTCAAGAGTATGCAAAGAGTTCTCCAGCCGGCAGCTGTCAGCTTTGCTTTAAACGTCACGTGAATCTCCAATGAGAGTGCACACTCAACTGTGTCCAGCACTttggattaaaaacaacaaaattacacacacaaaaaaacaacaaaaaaagaaaaaacatccaagTTTCCACTTCAcagaagttaaaataatattgaaatgctGTCAGCGCAGGCTGACCAGTGGTTACGTTTTCCACAGGGTAAAAAGCACAGGCCGGGGATCCAAACCATTCAATCCCTTCTGTTCCCTCGTAACGCATTCCTTTCATTCCTCGTGTGGCTCCTCATATTGACTGACACGGTTTTGATGGTGGAACAACAagacccctctctccccctccctctctctctccatttcgcTCTGTCTCGCCCCGTCTCTTCGGGTCAGTGTCCTTGGCAAGTCTTGCAGCACATCTGCCTGAAGTACGCTCGGCTGCAAAACTTGAACTTCAGCACCAGTGGGCAGTATGCCACCTTGTTTACATCTTTGCATTCTGGAAGggaaacacagtttaaaaaatatattaaaaactagGAATTTGAGTAAATGAACACTGGCAATAAGGAGGAAAAACCTGACAAGACGGTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102752 lncRNA upstream 75142 38477219 ~ 38483324 (+) True G82339
TU102751 lncRNA upstream 83358 38474850 ~ 38475108 (+) True G82338
TU102649 lncRNA upstream 133417 38423480 ~ 38425049 (+) True G82285
TU102651 lncRNA upstream 188424 38367669 ~ 38370042 (+) True AMCG00010656
TU102627 lncRNA upstream 204633 38352219 ~ 38353833 (+) False AMCG00010655
TU102860 lncRNA downstream 228042 38792325 ~ 38797886 (+) False AMCG00010687
TU102926 lncRNA downstream 462801 39027084 ~ 39027418 (+) True G82468
TU102954 lncRNA downstream 538637 39102920 ~ 39103266 (+) True G82488
TU102961 lncRNA downstream 587524 39151807 ~ 39152153 (+) True G82495
TU102990 lncRNA downstream 652544 39216827 ~ 39217078 (+) True G82520
AMCG00010669 mRNA upstream 23656 38515937 ~ 38534810 (+) True AMCG00010669
AMCG00010671 mRNA upstream 70180 38487689 ~ 38488286 (+) True AMCG00010671
AMCG00010670 mRNA upstream 70939 38484121 ~ 38487527 (+) True AMCG00010670
AMCG00010661 mRNA upstream 84305 38468372 ~ 38474161 (+) True AMCG00010661
AMCG00010660 mRNA upstream 99530 38447303 ~ 38458936 (+) True AMCG00010660
AMCG00010672 mRNA downstream 67521 38631804 ~ 38633945 (+) True AMCG00010672
AMCG00010681 mRNA downstream 72193 38636476 ~ 38638532 (+) False AMCG00010681
AMCG00010673 mRNA downstream 88602 38652885 ~ 38661453 (+) True AMCG00010673
AMCG00010684 mRNA downstream 107914 38672197 ~ 38673526 (+) True AMCG00010684
AMCG00010675 mRNA downstream 107941 38672224 ~ 38675740 (+) True AMCG00010675
TU102593 other upstream 306456 38247021 ~ 38252010 (+) False AMCG00010648
TU102591 other upstream 388935 38169156 ~ 38169531 (+) True G82236
TU102525 other upstream 670303 37886220 ~ 37888163 (+) True G82192
TU102276 other upstream 1294417 37261324 ~ 37264049 (+) True G81987
TU102257 other upstream 1307297 37235766 ~ 37251169 (+) False G81971
TU102794 other downstream 73220 38637503 ~ 38640125 (+) True AMCG00010681
TU102818 other downstream 217796 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other downstream 217796 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other downstream 217796 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other downstream 217796 38782079 ~ 38790768 (+) False AMCG00010687

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU149403 True 5669 lncRNA 0.36 7 NC_047602.1 3568989 ~ 3575303 (+)