RNA id: TU103043


Basic Information

Item Value
RNA id TU103043
length 1621
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G82561
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 39456755 ~ 39509252 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcgcgtgtgtgtgagtgagacgagtgagcgcgtgtgtgagtgagacgagtgagcgtgtgtgtgtgtgagtgagacgAGTGAGTGAGACATGGGAGTGAGaggcgcgtgtgtgtgtgtgagtgagatgAGTGAGCGTGTGCGCGAGTGAGTGAGTAAGTGAGAGTGCTGTACAATGTCATGGCAACTTTCGAGTGGATACAGGATCTGCTGACCAGGTGAATGGGGTCCCGTCTGTGCCCCAGCAGGTCTGCTTATTGGCCGCTCCTTGGTGATCTGATACAGCTGGATTCTGGGAAATCATGTGCAATGATTAGAGAGTCATCCACCCATCGATCGCAACGGAGGATTTCACTAACGATGGAAATGGGGATAATCCACAAGAGTGAGAATGGGGGGACACTTCTCTTATTCCAAAGTTGCCATATGGAATTAAAACGtgccttatttttaaatttcttaaTGAATCTTTGTGTATCTGTTCTTACCGGCTCGTCTTTGTATCTCGTTGTGTCCCGTCCGCTCTGTCGGCCGAGCAAACGAGAGGAATTCGCAAACACGTGACCGGAGTGAAATATAACCCACTGCGGTGGCGCCGGGGGAAGTCACGGCACACGTGTGGACACCGGCAGTTCTGTgcgtttgtttttgtaatgcgGTGTCTTCGTTAAGGCCTGTCGAGAcacctttctttccttttcgTTTTTTAAGTGGGAGAGACTCGGGGAGtaattttgtcttgtttgtggGCAGGGTGGTGGGCTTTGCTTTGTAGGTTgggaaatgtgtttatatgtttgttttgctttggggaGCGGGGGGGTGGAGGGCAGACGTGTAATTTATCAAGAAAGTCGGCTTTGCAGTGAGTTTTCTGTACTATGAAATTTACcatcgattttttttttttacattactgcTTCACATGGACCAAATTTAATTGGAGAggattctgtttttaatacatttttgacagATTCCACGgttgtattgatttaatactGAAAACAGCAGTTGACTATTTAACAGTCATAGTTATATAGTGACTAGGGGTGAGCAGGAGTGAGGCTGTTTGCAATAGTTCTCAGTTGAAAGCTTTTATTTCAGAATCGCCCCTTTAACTCGTGAAATGACTATTAAAACTAATAGAAACAGACGCATTTTGTTCTAATGATCCTTTGGCCTTGTACCTTGGGGTTAAATGAGTTTGATaagcctttaaaaaagaaaatgtaaaacagtttaaaacattgtcaGCCACTGTAATCTGACTTTTAAATCTAATATTTGTCTTTGCCACCAGTATGTTTTAACCACATCATCAAATCAACAGTTAAAGGGGAGTTTAAGAtataaaagcagttttaaaaacattttaaaggacaCTGTTGTGAGAGCAGGATCTCGTGCAGACCCCCGCCAATCAATCCTGAGAAAAGCAACTGCCCCAGATCAGAGTGCATATTAACTGATTTCTACTGtggtcattgtttttaaatgtaataaagtgCACTTTTTCTCTGAGTTTCCGGCTCCACCAGTTCTGTCTGTTCATTCATATCTCAATTCACAGGAAATGCGCTGAACCTGCGCTGCTTTCTTATTGAAGTAGTGATGCGAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103022 lncRNA upstream 132420 39371698 ~ 39374063 (+) True G82548
TU103017 lncRNA upstream 199329 39306929 ~ 39307154 (+) True G82545
TU102992 lncRNA upstream 257858 39242857 ~ 39248625 (+) True AMCG00010695
TU102993 lncRNA upstream 267995 39235825 ~ 39238488 (+) True G82523
TU102991 lncRNA upstream 286276 39219919 ~ 39220207 (+) True G82521
TU103121 lncRNA downstream 37289 39546541 ~ 39546879 (+) True G82620
TU103138 lncRNA downstream 169221 39678473 ~ 39695118 (+) True G82637
TU103139 lncRNA downstream 188301 39697553 ~ 39697774 (+) True G82638
TU103140 lncRNA downstream 189909 39699161 ~ 39699367 (+) True G82639
TU103144 lncRNA downstream 199911 39709163 ~ 39710896 (+) True G82643
AMCG00010701 mRNA upstream 725 39499001 ~ 39505758 (+) True AMCG00010701
AMCG00010702 mRNA upstream 17509 39479277 ~ 39488974 (+) True AMCG00010702
AMCG00010700 mRNA upstream 42989 39456337 ~ 39463494 (+) True AMCG00010700
AMCG00010706 mRNA upstream 62408 39436038 ~ 39444075 (+) True AMCG00010706
AMCG00010705 mRNA upstream 71258 39412516 ~ 39435225 (+) True AMCG00010705
AMCG00010703 mRNA downstream 40270 39549522 ~ 39558213 (+) True AMCG00010703
AMCG00010707 mRNA downstream 66352 39575604 ~ 39593245 (+) True AMCG00010707
AMCG00010708 mRNA downstream 105884 39615136 ~ 39655340 (+) True AMCG00010708
AMCG00010715 mRNA downstream 294050 39803302 ~ 39803661 (+) True AMCG00010715
AMCG00010712 mRNA downstream 304180 39813432 ~ 39834594 (+) True AMCG00010712
TU102818 other upstream 715715 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other upstream 715715 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other upstream 715715 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other upstream 715715 38782079 ~ 38790768 (+) False AMCG00010687
TU102794 other upstream 866358 38637503 ~ 38640125 (+) True AMCG00010681
TU103177 other downstream 339694 39848946 ~ 39849369 (+) True G82671
TU103237 other downstream 537834 40047086 ~ 40049815 (+) True G82723
TU103450 other downstream 1043505 40552757 ~ 40554854 (+) False AMCG00010735
TU103506 other downstream 1179265 40688517 ~ 40690850 (+) True G82939
TU103580 other downstream 1417927 40927179 ~ 40930030 (+) True G83001

Expression Profile