RNA id: TU103121


Basic Information

Item Value
RNA id TU103121
length 339
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G82620
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 39546541 ~ 39546879 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aggccattcaccccatcgtgctcgtttggtgtccattaataactgagtgatcaaggatcctatccagtctgtttttgaatgttcccaaattgtctctccagccacatcgctggggagtttgttcagattgtgacgcctctcggtgtgaagaagtgtctcctgttttctgtcttgaatgccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccagggtgagaaggttcaggtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103046 lncRNA upstream 37289 39456755 ~ 39509252 (+) False G82561
TU103043 lncRNA upstream 37289 39506483 ~ 39509252 (+) True G82561
TU103022 lncRNA upstream 172478 39371698 ~ 39374063 (+) True G82548
TU103017 lncRNA upstream 239387 39306929 ~ 39307154 (+) True G82545
TU102992 lncRNA upstream 297916 39242857 ~ 39248625 (+) True AMCG00010695
TU103138 lncRNA downstream 131594 39678473 ~ 39695118 (+) True G82637
TU103139 lncRNA downstream 150674 39697553 ~ 39697774 (+) True G82638
TU103140 lncRNA downstream 152282 39699161 ~ 39699367 (+) True G82639
TU103144 lncRNA downstream 162284 39709163 ~ 39710896 (+) True G82643
TU103145 lncRNA downstream 164084 39710963 ~ 39716180 (+) True G82644
AMCG00010701 mRNA upstream 40783 39499001 ~ 39505758 (+) True AMCG00010701
AMCG00010702 mRNA upstream 57567 39479277 ~ 39488974 (+) True AMCG00010702
AMCG00010700 mRNA upstream 83047 39456337 ~ 39463494 (+) True AMCG00010700
AMCG00010706 mRNA upstream 102466 39436038 ~ 39444075 (+) True AMCG00010706
AMCG00010705 mRNA upstream 111316 39412516 ~ 39435225 (+) True AMCG00010705
AMCG00010703 mRNA downstream 2643 39549522 ~ 39558213 (+) True AMCG00010703
AMCG00010707 mRNA downstream 28725 39575604 ~ 39593245 (+) True AMCG00010707
AMCG00010708 mRNA downstream 68257 39615136 ~ 39655340 (+) True AMCG00010708
AMCG00010715 mRNA downstream 256423 39803302 ~ 39803661 (+) True AMCG00010715
AMCG00010712 mRNA downstream 266553 39813432 ~ 39834594 (+) True AMCG00010712
TU102818 other upstream 755773 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other upstream 755773 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other upstream 755773 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other upstream 755773 38782079 ~ 38790768 (+) False AMCG00010687
TU102794 other upstream 906416 38637503 ~ 38640125 (+) True AMCG00010681
TU103177 other downstream 302067 39848946 ~ 39849369 (+) True G82671
TU103237 other downstream 500207 40047086 ~ 40049815 (+) True G82723
TU103450 other downstream 1005878 40552757 ~ 40554854 (+) False AMCG00010735
TU103506 other downstream 1141638 40688517 ~ 40690850 (+) True G82939
TU103580 other downstream 1380300 40927179 ~ 40930030 (+) True G83001

Expression Profile