RNA id: TU103138


Basic Information

Item Value
RNA id TU103138
length 1689
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G82637
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 39678473 ~ 39695118 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTCTGGCTCTGCGGCGGCGCAAGCGGCGGCTCTGGCTGCGGGCCAGGCAGCACCAGAATTAGCTCATTGTTAGGATATACAGTGCAGAGCCAGTCCGCTCCAACCCAGCCTTGGGGAGGGAGGCTTTTTCCGAGGGCTGCACTCTGCCTTCTCCTTCCCTGTTTGCAGCGGTGTACCCCGGCTCTGCGTGCATGTAGGGCAGCAGGAGGCGGCGCGGCTGGTCGGTCTGGTGCTCGCCTTCAGAAGAGCAGCAGCGGTGCGCCAGTGTCCCAGCTGCTGATCATGACACCAGCTTCGGGATGAGACTGAGACCAGCAGCCACGATGGGGCTTCTCCGGAGGGACGCCTGCAGGCTGCCCTCCCGGTTGAGGTCGAAGGGGATCCACGACACCAACTCTCCGCTCTGGCCTCCTGCTGTCGGCTGACcggggaagaaaagaaaaaaaaaaaagaaaaaaaaaaaaaaggaaatgtgtgtatatatatatatatattacctcCTATTTTTCCTGAATCATATATCTTCcatttgtaatgatttggtGTGTGGGTATAGATGAGATCATAACAAAAATGggactttattttctcttattttttaaagtatcaTTATTAAACAAACGGAATAAATAACGTGTAGGTATGTCTGGGACTCTAAGCCTTGCTGATcggtatttatatttctttccgGAAACGTcaaatgacacaaaacaaatcaagacaGACCTGGCAGATTTGAGCGACGGCAACATCGATACTGTGAGTCCATGTTTACAATCGCCACAGGGGGGCCGCGGACCCCGGTCACTGTTGAAGCAGCATGTCTTCCACTTCTCACCGTACATGCGTGACGGCTCAATACCTATCTATGTACACACTCTTGACAGGATTTTACTAAGGCTGAGAGTCCCCTCTTTCTGCTTAttagattttacttttcttttttgtttgttcgttcGTTCGTTCGTTCGTTCGTTCGTTCGTTTGACTTTGCCAGTATAAACCCATATGTTAGCCATGTTCATGTTGATGTATAGAAGTAGTTGTAGAATTGCATTGTTTCCTTGTGGTAAGTGATTGAGATGCTGCCACGGATTTGAGACACTGATGAATGGTGCTATTTTGGACTTTATATCTGCTCCTTGGTAAGGTAGCTCTGATgggttattatgattattattttgtttttgttttgttgttttattttcatgttctGAGATGGTGTTGGCTCTTTGTCGTCTGGTTATTGTTACTTGGTCTGGATTGACTTGTTTTTCTGTCGTTTTCTGTGTGGCTTTCTCGCTGGGTACAGGACAAAGATGATCACatgcatgagagagagaaaaggcagaGAGGTTTACATCCGAGGGAGTTCTCTGGAGGGACAGGCAAGATTTGTATAGGGGGGAGCAATCACAAAACTGcaatcttcaaatatttttaccTTTGAATGCCAAGATGCCAATTCAACGACCTGGTATGATTCCCTGACACTCGTTATGAAGGCTAAAATGGTCCAAACGCATCTACAAGCGCACGAATCctgttgaaaacaaattaaacgcTTCCTTAAAACCGAATGAATGAGTGATGACTTATACTGTACAATCATCTGAGGTCCATAAAAactttgtcagggaaccaaccagagagagagcatgcattgacttgatcttttcaaatNNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103121 lncRNA upstream 131594 39546541 ~ 39546879 (+) True G82620
TU103046 lncRNA upstream 169221 39456755 ~ 39509252 (+) False G82561
TU103043 lncRNA upstream 169221 39506483 ~ 39509252 (+) True G82561
TU103022 lncRNA upstream 304410 39371698 ~ 39374063 (+) True G82548
TU103017 lncRNA upstream 371319 39306929 ~ 39307154 (+) True G82545
TU103139 lncRNA downstream 2435 39697553 ~ 39697774 (+) True G82638
TU103140 lncRNA downstream 4043 39699161 ~ 39699367 (+) True G82639
TU103144 lncRNA downstream 14045 39709163 ~ 39710896 (+) True G82643
TU103145 lncRNA downstream 15845 39710963 ~ 39716180 (+) True G82644
TU103166 lncRNA downstream 90041 39785159 ~ 39785468 (+) True G82665
AMCG00010708 mRNA upstream 23133 39615136 ~ 39655340 (+) True AMCG00010708
AMCG00010707 mRNA upstream 85228 39575604 ~ 39593245 (+) True AMCG00010707
AMCG00010703 mRNA upstream 120260 39549522 ~ 39558213 (+) True AMCG00010703
AMCG00010701 mRNA upstream 172715 39499001 ~ 39505758 (+) True AMCG00010701
AMCG00010702 mRNA upstream 189499 39479277 ~ 39488974 (+) True AMCG00010702
AMCG00010715 mRNA downstream 108184 39803302 ~ 39803661 (+) True AMCG00010715
AMCG00010712 mRNA downstream 118314 39813432 ~ 39834594 (+) True AMCG00010712
AMCG00010714 mRNA downstream 150655 39845773 ~ 39853457 (+) True AMCG00010714
AMCG00010717 mRNA downstream 174054 39869172 ~ 39875972 (+) True AMCG00010717
AMCG00010719 mRNA downstream 189314 39884432 ~ 39891626 (+) True AMCG00010719
TU102818 other upstream 887705 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other upstream 887705 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other upstream 887705 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other upstream 887705 38782079 ~ 38790768 (+) False AMCG00010687
TU102794 other upstream 1038348 38637503 ~ 38640125 (+) True AMCG00010681
TU103177 other downstream 153828 39848946 ~ 39849369 (+) True G82671
TU103237 other downstream 351968 40047086 ~ 40049815 (+) True G82723
TU103450 other downstream 857639 40552757 ~ 40554854 (+) False AMCG00010735
TU103506 other downstream 993399 40688517 ~ 40690850 (+) True G82939
TU103580 other downstream 1232061 40927179 ~ 40930030 (+) True G83001

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004680 False 5624 mRNA 0.41 3 NC_007121.7 1708117 ~ 1718395 (-)
grasscarp (Ctenopharyngodon idella) TU422672 True 4158 lncRNA 0.38 4 CI01000168 100988 ~ 109227 (+)
striped catfish (Pangasianodon hypophthalmus) TU312682 False 3896 lncRNA 0.42 2 NC_047611.1 5105556 ~ 5157309 (-)