RNA id: TU103139


Basic Information

Item Value
RNA id TU103139
length 222
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G82638
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 39697553 ~ 39697774 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAAGCggtaatatgtttatttattctaactGTCTTTGGGCTGTTTGGAGTTTTTccctacaaaaacaaaatccacatcTAAATGGGGAGCCTCCAGCTGGCTGCTGCGATGCAGGGCGGTGATGTCAGCGCCTGATGGTGAAACGTTGCCAGattgtttgcagtttttgttAGATTTCCCTTGACCCGTTTTCTGCTCTAATATGCTGCGTTAAATGTAG

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103138 lncRNA upstream 2435 39678473 ~ 39695118 (+) True G82637
TU103121 lncRNA upstream 150674 39546541 ~ 39546879 (+) True G82620
TU103046 lncRNA upstream 188301 39456755 ~ 39509252 (+) False G82561
TU103043 lncRNA upstream 188301 39506483 ~ 39509252 (+) True G82561
TU103022 lncRNA upstream 323490 39371698 ~ 39374063 (+) True G82548
TU103140 lncRNA downstream 1387 39699161 ~ 39699367 (+) True G82639
TU103144 lncRNA downstream 11389 39709163 ~ 39710896 (+) True G82643
TU103145 lncRNA downstream 13189 39710963 ~ 39716180 (+) True G82644
TU103166 lncRNA downstream 87385 39785159 ~ 39785468 (+) True G82665
TU103174 lncRNA downstream 142290 39840064 ~ 39841471 (+) True G82668
AMCG00010708 mRNA upstream 42213 39615136 ~ 39655340 (+) True AMCG00010708
AMCG00010707 mRNA upstream 104308 39575604 ~ 39593245 (+) True AMCG00010707
AMCG00010703 mRNA upstream 139340 39549522 ~ 39558213 (+) True AMCG00010703
AMCG00010701 mRNA upstream 191795 39499001 ~ 39505758 (+) True AMCG00010701
AMCG00010702 mRNA upstream 208579 39479277 ~ 39488974 (+) True AMCG00010702
AMCG00010715 mRNA downstream 105528 39803302 ~ 39803661 (+) True AMCG00010715
AMCG00010712 mRNA downstream 115658 39813432 ~ 39834594 (+) True AMCG00010712
AMCG00010714 mRNA downstream 147999 39845773 ~ 39853457 (+) True AMCG00010714
AMCG00010717 mRNA downstream 171398 39869172 ~ 39875972 (+) True AMCG00010717
AMCG00010719 mRNA downstream 186658 39884432 ~ 39891626 (+) True AMCG00010719
TU102818 other upstream 906785 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other upstream 906785 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other upstream 906785 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other upstream 906785 38782079 ~ 38790768 (+) False AMCG00010687
TU102794 other upstream 1057428 38637503 ~ 38640125 (+) True AMCG00010681
TU103177 other downstream 151172 39848946 ~ 39849369 (+) True G82671
TU103237 other downstream 349312 40047086 ~ 40049815 (+) True G82723
TU103450 other downstream 854983 40552757 ~ 40554854 (+) False AMCG00010735
TU103506 other downstream 990743 40688517 ~ 40690850 (+) True G82939
TU103580 other downstream 1229405 40927179 ~ 40930030 (+) True G83001

Expression Profile