RNA id: TU103177


Basic Information

Item Value
RNA id TU103177
length 424
RNA type TUCP
GC content 0.52
exon number 1
gene id G82671
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 39848946 ~ 39849369 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaagattgaactcatgtctggaggaaaccaggcaccgctcatcacctggccaataccatccctacagtgaagcatggtggtggcagcatcatgctgtggggatgtttttcagcggcaggaactgggagactagtcaggatcgagggaaagatgaatgcagcaatgtacagagacatccttgatgaaaacctgctccagagcgctctggacctcagactggggcgaaggttcatcttccaacaggacaacgaccctaagcacacagccaagataacaaaggagtggctacaggacaactctgtgaatgtccttgagtggcccagccagagcccagacttgaacccgatttgaacatctctggagagatctgaaaatggctgtgcaccgacgctccccatccaacctgatggagcttgagaggtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103176 lncRNA upstream 1065 39846963 ~ 39847881 (+) True G82670
TU103174 lncRNA upstream 7475 39840064 ~ 39841471 (+) True G82668
TU103166 lncRNA upstream 63478 39785159 ~ 39785468 (+) True G82665
TU103145 lncRNA upstream 132766 39710963 ~ 39716180 (+) True G82644
TU103144 lncRNA upstream 138050 39709163 ~ 39710896 (+) True G82643
TU103183 lncRNA downstream 15664 39865033 ~ 39865308 (+) True G82677
TU103212 lncRNA downstream 124892 39974261 ~ 39974578 (+) True G82702
TU103230 lncRNA downstream 171498 40020867 ~ 40021624 (+) True G82716
TU103405 lncRNA downstream 459386 40308755 ~ 40308989 (+) True G82854
TU103463 lncRNA downstream 727377 40576746 ~ 40578776 (+) True AMCG00010738
AMCG00010712 mRNA upstream 14352 39813432 ~ 39834594 (+) True AMCG00010712
AMCG00010715 mRNA upstream 45285 39803302 ~ 39803661 (+) True AMCG00010715
AMCG00010708 mRNA upstream 193606 39615136 ~ 39655340 (+) True AMCG00010708
AMCG00010707 mRNA upstream 255701 39575604 ~ 39593245 (+) True AMCG00010707
AMCG00010703 mRNA upstream 290733 39549522 ~ 39558213 (+) True AMCG00010703
AMCG00010717 mRNA downstream 19803 39869172 ~ 39875972 (+) True AMCG00010717
AMCG00010719 mRNA downstream 35063 39884432 ~ 39891626 (+) True AMCG00010719
AMCG00010718 mRNA downstream 44756 39894125 ~ 39905511 (+) True AMCG00010718
AMCG00010716 mRNA downstream 68567 39917936 ~ 39972791 (+) True AMCG00010716
AMCG00010722 mRNA downstream 212399 40061768 ~ 40076718 (+) True AMCG00010722
TU102818 other upstream 1058178 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other upstream 1058178 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other upstream 1058178 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other upstream 1058178 38782079 ~ 38790768 (+) False AMCG00010687
TU102794 other upstream 1208821 38637503 ~ 38640125 (+) True AMCG00010681
TU103237 other downstream 197717 40047086 ~ 40049815 (+) True G82723
TU103450 other downstream 703388 40552757 ~ 40554854 (+) False AMCG00010735
TU103506 other downstream 839148 40688517 ~ 40690850 (+) True G82939
TU103580 other downstream 1077810 40927179 ~ 40930030 (+) True G83001

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU65594 False 1353 lncRNA 0.41 1 NC_053116.1 12252443 ~ 12253795 (+)
bowfin (Amia calva) TU75187 True 222 lncRNA 0.63 1 CM030127.1 5165267 ~ 5165488 (-)
tiger barb (Puntius tetrazona) TU75187 True 295 TUCP 0.49 2 NC_056705.1 5687790 ~ 5720325 (-)
mexican tetra (Astyanax mexicanus) TU75187 True 1485 lncRNA 0.37 2 NC_035902.1 31728742 ~ 31730248 (+)