RNA id: TU103237


Basic Information

Item Value
RNA id TU103237
length 410
RNA type TUCP
GC content 0.55
exon number 5
gene id G82723
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 40047086 ~ 40049815 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGAATGAAGAACAGGAGTTTAACGATTTAAAGGTGATGAAATTAATCAATCCCTCTGAACGGCAGCCGATAATGAAGGAAATCCTGTCCGAGTTTGGGATCCAGGGAGTCAGCCATGCGTTTGCACCCACCCGGGTTCCCAATGTGAAGTACGAGCTCACCGCGCCGCACTCTCCTGCACGAACCGACTCCCCGCCCCCCGTGCAGACAGCAGGACCCAGAGACTTCAGCGCTGTTCGCAACGAAGCCATGGAGCTGATCAACAGAGCCTTCGCCATATTGGACAACGAGTTTCACAAGCTCGATAATGAGAGGTCGGAGCTGGCTAGCGGGGCACGGGATCTTCAGCGCGAAAGAGACGCCTACAGTAGCCAGTACCAACTGCAGCAACAGGTGCGTTTCCTCTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103230 lncRNA upstream 25462 40020867 ~ 40021624 (+) True G82716
TU103212 lncRNA upstream 72508 39974261 ~ 39974578 (+) True G82702
TU103183 lncRNA upstream 181778 39865033 ~ 39865308 (+) True G82677
TU103176 lncRNA upstream 199205 39846963 ~ 39847881 (+) True G82670
TU103174 lncRNA upstream 205615 39840064 ~ 39841471 (+) True G82668
TU103405 lncRNA downstream 258940 40308755 ~ 40308989 (+) True G82854
TU103463 lncRNA downstream 526931 40576746 ~ 40578776 (+) True AMCG00010738
TU103507 lncRNA downstream 641080 40690895 ~ 40691478 (+) True G82940
TU103543 lncRNA downstream 727139 40776954 ~ 40777510 (+) True G82968
TU103546 lncRNA downstream 745280 40795095 ~ 40795556 (+) True G82971
AMCG00010716 mRNA upstream 74295 39917936 ~ 39972791 (+) True AMCG00010716
AMCG00010718 mRNA upstream 141575 39894125 ~ 39905511 (+) True AMCG00010718
AMCG00010719 mRNA upstream 155460 39884432 ~ 39891626 (+) True AMCG00010719
AMCG00010717 mRNA upstream 171114 39869172 ~ 39875972 (+) True AMCG00010717
AMCG00010714 mRNA upstream 193629 39845773 ~ 39853457 (+) True AMCG00010714
AMCG00010722 mRNA downstream 11953 40061768 ~ 40076718 (+) True AMCG00010722
AMCG00010734 mRNA downstream 436506 40486321 ~ 40489189 (+) True AMCG00010734
AMCG00010737 mRNA downstream 472442 40522257 ~ 40525468 (+) True AMCG00010737
AMCG00010736 mRNA downstream 491972 40541787 ~ 40552145 (+) True AMCG00010736
AMCG00010735 mRNA downstream 502552 40552367 ~ 40566357 (+) True AMCG00010735
TU103177 other upstream 197717 39848946 ~ 39849369 (+) True G82671
TU102818 other upstream 1256318 38782079 ~ 38790768 (+) False AMCG00010687
TU102819 other upstream 1256318 38782079 ~ 38790768 (+) False AMCG00010687
TU102820 other upstream 1256318 38782079 ~ 38790768 (+) True AMCG00010687
TU102822 other upstream 1256318 38782079 ~ 38790768 (+) False AMCG00010687
TU103450 other downstream 502942 40552757 ~ 40554854 (+) False AMCG00010735
TU103506 other downstream 638702 40688517 ~ 40690850 (+) True G82939
TU103580 other downstream 877364 40927179 ~ 40930030 (+) True G83001

Expression Profile