RNA id: TU103506


Basic Information

Item Value
RNA id TU103506
length 461
RNA type TUCP
GC content 0.57
exon number 4
gene id G82939
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 40688517 ~ 40690850 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCGGATATAGCAGCGCGCCGGCGTCTCTTCCGGCCTCTGTCGTGTCAGCCGCTGCGGGAAGATGGGAACCTCGTCATTCGGGAAGCGTCGCAACAAGACGCACACGCTGTGCCGCCGCTGCGGCTCCAAGGCCTACCACCTGCAGAAGTCCACCTGCGGGAAGTGCGGCTACCCGGCCAAGCGCAAGAGAAAGTATAACTGGAGCGCCAAGGCTAAGAGGCGTAACACCACTGGGACCGGACGCATGAGGCACCTGAAGGTCGTATACCGCAGGTTCAGAAACGGATTCCGCGAGGGAACCACCCCCAAACCCAAAAGAGCCGCCGTCGCTGCTTCCAGCTCCTCTTAGAGACACactttgttcaaaataaatgtgctgttaaaaaaaacaaaaaaaaaaacacctccttGTCCGTCTGTTCTGTCCCGGAGCATCATGGGAGTCGAGCGATCTTCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103463 lncRNA upstream 109741 40576746 ~ 40578776 (+) True AMCG00010738
TU103405 lncRNA upstream 379528 40308755 ~ 40308989 (+) True G82854
TU103230 lncRNA upstream 666893 40020867 ~ 40021624 (+) True G82716
TU103212 lncRNA upstream 713939 39974261 ~ 39974578 (+) True G82702
TU103183 lncRNA upstream 823209 39865033 ~ 39865308 (+) True G82677
TU103507 lncRNA downstream 45 40690895 ~ 40691478 (+) True G82940
TU103543 lncRNA downstream 86104 40776954 ~ 40777510 (+) True G82968
TU103546 lncRNA downstream 104245 40795095 ~ 40795556 (+) True G82971
TU103549 lncRNA downstream 141683 40832533 ~ 40832836 (+) True G82974
TU103581 lncRNA downstream 236329 40927179 ~ 40930030 (+) False G83001
AMCG00010739 mRNA upstream 93475 40591283 ~ 40595042 (+) True AMCG00010739
AMCG00010738 mRNA upstream 102395 40578151 ~ 40586122 (+) False AMCG00010738
AMCG00010735 mRNA upstream 122160 40552367 ~ 40566357 (+) True AMCG00010735
AMCG00010736 mRNA upstream 136372 40541787 ~ 40552145 (+) True AMCG00010736
AMCG00010737 mRNA upstream 163049 40522257 ~ 40525468 (+) True AMCG00010737
AMCG00010745 mRNA downstream 2117 40692967 ~ 40693329 (+) True AMCG00010745
AMCG00010744 mRNA downstream 7018 40697868 ~ 40702200 (+) True AMCG00010744
AMCG00010747 mRNA downstream 16409 40707259 ~ 40708428 (+) True AMCG00010747
AMCG00010743 mRNA downstream 28449 40719299 ~ 40728299 (+) True AMCG00010743
AMCG00010749 mRNA downstream 141232 40832082 ~ 40845381 (+) True AMCG00010749
TU103450 other upstream 133663 40552757 ~ 40554854 (+) False AMCG00010735
TU103237 other upstream 638702 40047086 ~ 40049815 (+) True G82723
TU103177 other upstream 839148 39848946 ~ 39849369 (+) True G82671
TU102819 other upstream 1897749 38782079 ~ 38790768 (+) False AMCG00010687
TU103580 other downstream 236329 40927179 ~ 40930030 (+) True G83001

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU433261 False 392 lncRNA 0.53 4 CI01000187 233283 ~ 236502 (-)