RNA id: TU103580


Basic Information

Item Value
RNA id TU103580
length 450
RNA type TUCP
GC content 0.52
exon number 3
gene id G83001
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 40927179 ~ 40930030 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGCGGGAGCAGATCTGCGTGTAGCGGCGCTGGAGGCCCGGAGCTGCAGGCCGGAATCTCAGCGGAGCAAACTCAGCCCAGAAAACCAAGATGGAGTACGAGTGGAAACCCGACGAGCAGGGGCTCCAGCAGATCCTGCAGCTGCTCAAGGAGTCGCAGTCCCCGGACACGACCACGCAGAGATCCGTCCAGCAAAAACTTGAGCAACTGAATCATTATCCTGACTTCAACAACTACTTGATTTTCGTCCTCACCAAGTTGAAATCGGAAGGTAAGATCTTGCCACCTCCTCTCGTGTGCGTCTGGGTGTCTGTGATCATGCTGTAAAGTACGACCATAAATATCCTGAGTGTTTATTTTGAGTGATTTCTGTGTTCTTGACAGTTAGACACTAGTCTTGTCTCAACCATGGAAGCCCTTATTGTGTAGCCGTGACAAAACCCTACCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103549 lncRNA upstream 94343 40832533 ~ 40832836 (+) True G82974
TU103546 lncRNA upstream 131623 40795095 ~ 40795556 (+) True G82971
TU103543 lncRNA upstream 149669 40776954 ~ 40777510 (+) True G82968
TU103507 lncRNA upstream 235701 40690895 ~ 40691478 (+) True G82940
TU103463 lncRNA upstream 348403 40576746 ~ 40578776 (+) True AMCG00010738
TU103638 lncRNA downstream 185829 41115859 ~ 41116188 (+) True G83045
AMCG00010750 mRNA upstream 24723 40894800 ~ 40902456 (+) True AMCG00010750
AMCG00010748 mRNA upstream 50601 40861675 ~ 40876578 (+) True AMCG00010748
AMCG00010749 mRNA upstream 81798 40832082 ~ 40845381 (+) True AMCG00010749
AMCG00010743 mRNA upstream 198880 40719299 ~ 40728299 (+) True AMCG00010743
AMCG00010747 mRNA upstream 218751 40707259 ~ 40708428 (+) True AMCG00010747
AMCG00010751 mRNA downstream 13423 40943453 ~ 40960484 (+) True AMCG00010751
AMCG00010759 mRNA downstream 53562 40983592 ~ 41020709 (+) True AMCG00010759
AMCG00010756 mRNA downstream 103656 41033686 ~ 41036633 (+) True AMCG00010756
AMCG00010760 mRNA downstream 195970 41126000 ~ 41130780 (+) True AMCG00010760
AMCG00010757 mRNA downstream 207600 41137630 ~ 41146739 (+) True AMCG00010757
TU103506 other upstream 236329 40688517 ~ 40690850 (+) True G82939
TU103450 other upstream 372325 40552757 ~ 40554854 (+) False AMCG00010735
TU103237 other upstream 877364 40047086 ~ 40049815 (+) True G82723
TU103177 other upstream 1077810 39848946 ~ 39849369 (+) True G82671
TU102820 other upstream 2136411 38782079 ~ 38790768 (+) True AMCG00010687

Expression Profile