RNA id: TU94324


Basic Information

Item Value
RNA id TU94324
length 2829
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G75533
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 31464 ~ 41400 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCATTGCAGCCTGGCTCTTGTGCTCAGATGTTGTTGGTGTGTATTTGCGCACAGCATTTCAGTATGATCCTGAAGTGTAGACCCCCTGACTGCGGCTGCGCGGCATTTGCACCCACAATGCACCACGCCCGGAATGCCATCACTGCCTGCTGTGTAGAGCGCTCTCATTTCACGTCATTCACTGGATCAGGACACTACTAGAAGCTGCAGGACACCCTCACGCATCAGTCGTCCTCGAGTCAAGCATCACCTACTCAAGTCTCCGGTATCAGGAtcgttactcacccctccctcagtcaattgtctctgctcctcctcacgcctcctcctcctcagcctcaTTCCGACATCACGCATCAGGTATCAGCGCTGCAATGGGCGCGTGTGCATAAGGCCCAAGGGGAGATTATTCGCGGCGGCCACCATCAGCCCTAACAGTTTTTGGAAGTTGACCAGCTGGAGAGtcgatgcccttctgaatgacgCCAGGCATTTCTCCAACGACTCGATTTGGTCTCTGGccaggtaggcaagcattttttgagagtccagcttcattcccaagaagcccaccatCTTTGCAGGTttgagggagcttttctctagGTGAACTGTGAGACCCTGTGCAGTCAAGTGACACATGACCTCTGCTGTGTGTTCCTCcacctgaagcctggagtctgcgcacaTCCAGAATCCAGGGGGCCAAGGCTATGTCCATGCACTTCGAGTGCGGGGAGCCAGGGAAAGGCCGAACGGCAGCACACTGAAATTATATGCCTGACCCTGGAAGGTATTTCCTGTGCTCTGGAGGATGGGGACATGGAAGAAGTGTCCCCGAGGTCATAGCTAGCTATGCATGTAGCCAACATAATATTAGGGTTTGTTATAGTcccctttccttttctgtcattgctaaaGTTGCAGAAGGGAGTtcggcttttaggtgggttaacacacaatttgtggtagtttaattgcactgcacattttacaattaacagtgttttcattcactttgtcaaagtatttctaTGCAGAACTTTTCAATGAGGAAGCCATCGTAAGCCGAGGCATGTTCTAGTTGAATGTTCGACTATTAGGTCTCACCCCTAGACTACAATCTGTGAAAAAGTtccattcaattaaatacattacagacatgtaatttaatttatatttattgcaaatgttggatttacaaaatatacacgataatgtgattaaaaactattaaatatcAAGACAATATTGATTCACAATGTTTTCCCACACTATCAGCATAGGTCCAACAGCAGCCATCATGCCAtgccatttataaataaatactatttctCAAAAATCTGCAACATGAACATTCAAGCCACAAACATTTCGTTAAACAATTCGTACCATTTGCAATAACCAGTCATTTGCATTACTAAAAAGTTGCATTCAAGTGACTAGACAGTTGCAGccaaaaactacaaaagcaatttaaagatgaaaacaaaacataaccaaTGACCCTGTTATATGCACTAgttgtaaaacattatataagtTTCTGTACTGCCTAAACTATAATACAAGTATCAACAGGATACAAACTCAAACTAATAATTTTTCATACTGTTTGAAAGGTTACCAAAAACCaacttcttaaaataaattaataataaatgtactaaAAATGACATGGACATATGTTCACTTAAAAACTTTTGTTATATAGCAATTAAAGTATGGGTCATATTTGGCAGACAGAAATATACCTTGATGATGACTAATTAAATCTCAAAAGCATATTACTGCACATTCTGTGTCTTTATAGAAAACAATTATgtattaaagggaaaaaaaaaaacattagtggtttaaagaaaacattttaaagaaaacagacagcatttaaaacaatgatgaatgattcaagttttattttacacaattgcAACAATCAATCATTACTGTGTGGAAGGTTTGCCACTGTAGCTATACTTCCGATAACTATTAAATGATTGGGAAAGCCAagaagttttgattttaattttattatttcgaataaatgtaatttgtcagCTGAACAGAATTGTAGGCTTTAGATTGAAATAATAAGCAGGACAGGATACCCAGTTTGTGCCTCTATGACTTCACCTCTCTGGATTCTGTGGATACATGTCCCTGTATAATTGGTTAAAATAGGTTTCCATCTTCTTCAGGCTGCCTTCTTGGTACATGTTCCTGGAGTTTCTTGCAAGTTAATTTTTGACTGTTATGAGTCATATGACTCTTGACCAAATGTCCTGCTGCCAAAGCTGCCATGAGAGACAGTTCTCCTGCCAGGACAGTGGCACACACCACCCTGGCCAGCTGCCGTGCATTTTCACCTGGTGTGTCTGGACTAGCTCCTTGAACTCCCaacatctataataataataataatagtaataatttcacatttcttagaaaataaaataaaaaaaaatatattttttttaatcattcaaaTCAGATCACTGGAATCATTACAACTGCTAATAGTACTCAGTACAAACATGTATTGGAGGACCTAGATTCATCAAAACCTGCAACAACTGGATTCCTGTTCAAAGGTTCTAGTTTGTTGTGTAGTagcattagaaaataaaatgacagtatAATAGAAAGGATAATGGGTACAGTCAGTGTAGTCTACCAACATACTtaaaggcataatacatttcgGTCCCTGCTTTAGTGAATATCTGTAGCTATACAAGATACCAATATATGCAATATCCAATacgtcaaaaaaaaaaaaaaaatacttgtcaGTATGCATTCCAGCTACTGGTTGAATCATTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94316 lncRNA downstream 6159 47559 ~ 91783 (+) False G75528
TU94314 lncRNA downstream 50058 91458 ~ 98029 (+) True G75528
TU94349 lncRNA downstream 64673 106073 ~ 107045 (+) True G75556
TU94366 lncRNA downstream 263393 304793 ~ 319899 (+) True G75572
TU94403 lncRNA downstream 545464 586864 ~ 608775 (+) True G75600
AMCG00009813 mRNA downstream 65833 107233 ~ 107590 (+) True AMCG00009813
AMCG00009810 mRNA downstream 67284 108684 ~ 122048 (+) True AMCG00009810
AMCG00009815 mRNA downstream 190634 232034 ~ 233872 (+) True AMCG00009815
AMCG00009818 mRNA downstream 590994 632394 ~ 654167 (+) True AMCG00009818
AMCG00009820 mRNA downstream 647499 688899 ~ 702109 (+) True AMCG00009820
TU94510 other downstream 826280 867680 ~ 871735 (+) False AMCG00009821
TU94585 other downstream 995806 1037206 ~ 1037442 (+) True G75745
TU94657 other downstream 1281218 1322618 ~ 1327564 (+) False AMCG00009844
TU94663 other downstream 1292567 1333967 ~ 1335050 (+) True G75807
TU94664 other downstream 1319136 1360536 ~ 1363834 (+) True AMCG00009851

Expression Profile