RNA id: TU94585


Basic Information

Item Value
RNA id TU94585
length 237
RNA type TUCP
GC content 0.57
exon number 1
gene id G75745
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1037206 ~ 1037442 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACAACCCTGGTGGAGAACAGAGGGATGCTCGCCTTCGCCTGGATCCTCTTCCTCATCGCCTGCGGGACCATCGTATGTGCCATAGTAATCTGGGAAGAGGGCGCCTTGAACTCCAAGCAGACGGGATCATCACTGACTGGGGAAACCAGTCTAGAAGAAGCTGACATCGGCATCACCCTGCAGCTAACAGCACAGGGCCAGAGCAGTGGCCCAAAAGGAGCAAAAGGACGCACGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94583 lncRNA upstream 5489 1031466 ~ 1031717 (+) True G75743
TU94559 lncRNA upstream 41359 984596 ~ 995847 (+) False AMCG00009838
TU94451 lncRNA upstream 291134 742885 ~ 746072 (+) True G75644
TU94449 lncRNA upstream 296176 740479 ~ 741030 (+) True G75642
TU94403 lncRNA upstream 428431 586864 ~ 608775 (+) True G75600
TU94618 lncRNA downstream 133264 1170706 ~ 1174954 (+) True G75767
TU94640 lncRNA downstream 229417 1266859 ~ 1280227 (+) False AMCG00009846
TU94641 lncRNA downstream 229417 1266859 ~ 1273549 (+) False AMCG00009846
TU94681 lncRNA downstream 360716 1398158 ~ 1399008 (+) True G75817
TU94684 lncRNA downstream 371738 1409180 ~ 1414030 (+) False AMCG00009852
AMCG00009837 mRNA upstream 15792 1014074 ~ 1021414 (+) True AMCG00009837
AMCG00009838 mRNA upstream 41373 985342 ~ 995833 (+) True AMCG00009838
AMCG00009842 mRNA upstream 62754 962006 ~ 974452 (+) True AMCG00009842
AMCG00009841 mRNA upstream 87517 949129 ~ 949689 (+) True AMCG00009841
AMCG00009843 mRNA upstream 114521 920888 ~ 922685 (+) True AMCG00009843
AMCG00009840 mRNA downstream 160188 1197630 ~ 1223449 (+) True AMCG00009840
AMCG00009839 mRNA downstream 197314 1234756 ~ 1245100 (+) True AMCG00009839
AMCG00009846 mRNA downstream 229443 1266885 ~ 1298242 (+) True AMCG00009846
AMCG00009845 mRNA downstream 272283 1309725 ~ 1313842 (+) True AMCG00009845
AMCG00009844 mRNA downstream 285180 1322622 ~ 1327593 (+) True AMCG00009844
TU94510 other upstream 165471 867680 ~ 871735 (+) False AMCG00009821
TU94657 other downstream 285176 1322618 ~ 1327564 (+) False AMCG00009844
TU94663 other downstream 296525 1333967 ~ 1335050 (+) True G75807
TU94664 other downstream 323094 1360536 ~ 1363834 (+) True AMCG00009851
TU96625 other downstream 10112184 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 10663264 11700706 ~ 11701081 (+) True G77541

Expression Profile