RNA id: TU94663


Basic Information

Item Value
RNA id TU94663
length 414
RNA type TUCP
GC content 0.47
exon number 2
gene id G75807
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 1333967 ~ 1335050 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCGGCACAACTCACAACAGTTAGCCACCTGGCTCCTTCATTTCATCGCCAGTAACTTTCTGATCTTCAAACAGAGAGATGACTTCCTGTACCTCACTGAGGAGGAGCAAAAGTGGGTGGAGTGGCACAGGTGGCCGAAGGAGTATTACCTACGCAGTCTGTCTTCGTACCAGCAGTGGGTCGACAGCCATCACACCGAATACTGCACACTTCTATGACTGGGACCctggtgtgagagagagggggagattATCTGGCATTTGCCTCTGCAATgcacagttgtttttcttttgcctaattaaattattttattttggagagCTATGCGAGAAGTGGCACCCCCAGCTGTACGCCAAGTACGCACTGTGCATACCATAGCAACATCAGAATTTGTATATAAACTGTCTataattg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94640 lncRNA upstream 53740 1266859 ~ 1280227 (+) False AMCG00009846
TU94641 lncRNA upstream 60418 1266859 ~ 1273549 (+) False AMCG00009846
TU94618 lncRNA upstream 159013 1170706 ~ 1174954 (+) True G75767
TU94583 lncRNA upstream 302250 1031466 ~ 1031717 (+) True G75743
TU94559 lncRNA upstream 338120 984596 ~ 995847 (+) False AMCG00009838
TU94681 lncRNA downstream 63108 1398158 ~ 1399008 (+) True G75817
TU94684 lncRNA downstream 74130 1409180 ~ 1414030 (+) False AMCG00009852
TU94689 lncRNA downstream 74130 1409180 ~ 1423122 (+) False AMCG00009852
TU94685 lncRNA downstream 77250 1412300 ~ 1423122 (+) True AMCG00009852
TU94686 lncRNA downstream 77250 1412300 ~ 1423122 (+) False AMCG00009852
AMCG00009844 mRNA upstream 6374 1322622 ~ 1327593 (+) True AMCG00009844
AMCG00009845 mRNA upstream 20125 1309725 ~ 1313842 (+) True AMCG00009845
AMCG00009846 mRNA upstream 35725 1266885 ~ 1298242 (+) True AMCG00009846
AMCG00009839 mRNA upstream 88867 1234756 ~ 1245100 (+) True AMCG00009839
AMCG00009840 mRNA upstream 110518 1197630 ~ 1223449 (+) True AMCG00009840
AMCG00009851 mRNA downstream 25534 1360584 ~ 1368815 (+) False AMCG00009851
AMCG00009852 mRNA downstream 77514 1412564 ~ 1413371 (+) False AMCG00009852
AMCG00009850 mRNA downstream 94884 1429934 ~ 1485095 (+) True AMCG00009850
AMCG00009854 mRNA downstream 176369 1511419 ~ 1511967 (+) True AMCG00009854
AMCG00009856 mRNA downstream 252248 1587298 ~ 1593804 (+) True AMCG00009856
TU94657 other upstream 6403 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 296525 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 462232 867680 ~ 871735 (+) False AMCG00009821
TU94664 other downstream 25486 1360536 ~ 1363834 (+) True AMCG00009851
TU96625 other downstream 9814576 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 10365656 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 14305911 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 14722481 16057531 ~ 16060087 (+) True G78198

Expression Profile