RNA id: TU95095



Basic Information


Item Value
RNA id TU95095
length 826
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G76168
representative False

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 3891161 ~ 3894819 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTGCTTCTGAACCATCAGGGGTAAGAATTTTACAGAATTTATGGTTATCTTTTAAATAGCTTCGGGGTGAGATTTGGTGAACCAACATAATATACTTCTAACAAATGTCGAAGGATGTATAATAGAATCCCTTCAAAACACCaatatgcaatattttacatatgtgAAGGCTTTCAGCTGTTCAACTGGGTCCACAAGAGGAACAGAGGAATATTACATTGCCATTGGCCTGATTATATTTGAGCACTGAAATGCTTCACTTGTATCTAAAAatcattaatcattttacaCTAAGAAAATAAGGAActtgtattacaaaataagGTGAATGCACAAATCAGAAGATTTTGGTTGtatccattttatttacaaGGAATTAAAGTCTCCCATTCTTCCATAAAAGAGTTCTGCAAGTTTGTCCATNNNNNNNNACCTGGTATGCATTACAGTGGGCATTAGAGCCTCATTTCTTCAAGAGCTGATGTCTGACCACAATGAAGGGGAATGTGAAACCACTGCCGAAGAAGAGGACCATCATGCCCAAAAGCCTCCATTTGTTCTCCACTGAGAAAGGAAGGTTCTTCCTGGTCCTTCTCCGTAATGAGAGCTGCGAATGGCGGAGGTAGTGAACCTGCGAACAGCCTGGCCCAACATGGCTGGTTTCTAAGATTTTTCTGCTTTTGGGTTTATTTCTCTCTTCACTCCACTGCACTGCCGGCGCGACCTTCTTTCTGAAAGAGACAGGAACAGCGAACGGACTTATGGGACAGCGCAATGCGCCAACTTCCGGGTGGAGGAGCGTAGCCTTATGGGAAGCGTAGTCTTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU95090 lncRNA upstream 94153 3796551 ~ 3797008 (+) True G76163
TU95024 lncRNA upstream 287556 3538497 ~ 3603605 (+) True G76105
TU95026 lncRNA upstream 287556 3552807 ~ 3603605 (+) False G76105
TU94989 lncRNA upstream 470335 3420612 ~ 3420826 (+) True G76077
TU94963 lncRNA upstream 751268 3138953 ~ 3139893 (+) True G76054
TU95119 lncRNA downstream 358418 4253237 ~ 4253554 (+) True G76186
TU95199 lncRNA downstream 1016451 4911270 ~ 4920846 (+) False AMCG00009898
TU95233 lncRNA downstream 1263569 5158388 ~ 5228786 (+) True G76266
TU95253 lncRNA downstream 1348908 5243727 ~ 5248181 (+) False AMCG00009897
TU95334 lncRNA downstream 1567704 5462523 ~ 5462811 (+) True G76346
AMCG00009881 mRNA upstream 154516 3728279 ~ 3736645 (+) True AMCG00009881
AMCG00009880 mRNA upstream 231924 3628889 ~ 3659237 (+) True AMCG00009880
AMCG00009879 mRNA upstream 378830 3494369 ~ 3512331 (+) True AMCG00009879
AMCG00009878 mRNA upstream 408565 3481976 ~ 3482596 (+) True AMCG00009878
AMCG00009871 mRNA upstream 743667 3141929 ~ 3147494 (+) True AMCG00009871
AMCG00009885 mRNA downstream 422219 4317038 ~ 4317867 (+) True AMCG00009885
AMCG00009890 mRNA downstream 451845 4346664 ~ 4471973 (+) True AMCG00009890
AMCG00009889 mRNA downstream 580473 4475292 ~ 4476458 (+) True AMCG00009889
AMCG00009891 mRNA downstream 582802 4477621 ~ 4478723 (+) True AMCG00009891
AMCG00009888 mRNA downstream 804863 4699682 ~ 4716944 (+) True AMCG00009888
TU94664 other upstream 2527327 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 2556111 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 2563597 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 2853719 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 3019426 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 7254807 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 7805887 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 11746142 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 12162712 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 13329063 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile