RNA id: TU95410


Basic Information

Item Value
RNA id TU95410
length 5878
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G76408
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5744257 ~ 5751212 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCAGTCCAGAAAGGGCAGTGCCTCCAGCTCTCATTCTCTCGGGCAAGGAAGAGCCAGGGGATGCTCGGCCTGGAGAGACACGCCCATTCCTGCGGGGGCAGCCAAAAGGGTGGAATGGGCTTCCTcctgtttttccttcttctgttcttctgtgtTGGCTTTTAAGGCCTCCAGAAGGGATGTGTTTGCTGGTGGCTGGGTGGTGCTGGCACTGAGCCCCCTACCTCTTACAATGGCCTGTTAACGACACATGCCCCCATGTGGAGGCCGCAGTCACCCTTACACACGCTGCAGGCACAGCTGACAGACCCCACTGAGCGGCCCCTGAATGCAAAAGTGAAACCGCACTATTCTGGACACATTGGCTTGTAATTCAGGACAATAAACACACAGCCCTACATGAGTAAACCGAGCACCCTTTGATGTAGCAGTAATAATCAAggcaaaacaccaagcacaaaacggAGAAGGCACATGCACAGTACTGTCCGGCCGAGCCTAACACTGTGTTGTGGGAGTACAATGTGGCCCCGCTGTGTCGAGTGAATTGCTGTCTTTTACTCTGCCAGGCCTCTGTAGAACTGGGTTATGATGCTCAGCGCTATTGCGGAGTCCTTAGATCCTCCTGGactgtcaatttattttattattttggactTTACAGAGGGGaacccctcacacacacacacacacacacacacacacacacacacacacaactcctgGGACTTCCTGCAGACACGGACACCCAAGGACTCCCGAGGTCTCTTgcgactttttttgttttcttgttttgtttccgGTTCTCttctttctgttgctgttgGTTTTCTCTTCAAGACTGTTATTGTACAGCaacagggaagaaaacaaaacagaaacactcGAGGTCGCTTCAATGATGCCTTTGTTCCCAGAGAGGaagacacggagagagagaagtgatgTGATAGGACAACAGTGTATTCTTCTCTTATCTGGGAACCTACTgactgacaaacaaacacacataatagGTGTCAGGGAAGACAAAATAGACTAAAAGTAGACTAAACAGGCTTTGAGTTCTGAGAGAGGACCCTCCGGCTCTGCCCGCCTGTCCATGGCAATTTTTTTCAGCTCTTTTTGACTGTTTGTGGTGGAGGAGGCGGTTGGTGAAAGTTACCAGTGTTTAATGGGATGATCCAGTTCCTGTTTCTCAAACGCAGCCTCAGAGAAAGCACTGCCACCCCTCCTTCTGCAcatgtttttcactttcattttcttcactttttctctttctagATTTCTCAGTCTTCCTCCAGGTTTTTGTATGTAAACTCAGTAGAAGACCGTGTACAcgtttattattacaaatttatttttctgatttccTCTCCGTTGTTCTTCATAtgtcctgtttttttaaccaaaaacaaaactgtgaatATTCGTTCAGTTTGAGGTGACTCCCCAGTCACCCCCGTCCCTTACTCTCCATCTTTCTGGGATGGAGAGTGAGAGCACAAGAGAGAACTAGACGAGTGAATGGTGTTAGAGAGAAGGCCGTTCAGACAGAGGTTATCTATGATTTGTAGAGACAAACAATGACCACAGTTGTTATAGTGTAAATCTATTAAGCTGGTGGACTTCCGTGTCCCTGAGGCACATCTACGTGTGTTGTTTGACATGGATGCTATGATTGGTTGAAGTTCAGTGTTTCCTGTGGGCtcctttaaaaatcacatttactgCTAGTCACTCTCTGATGTTCCGTTTGATTCCCGTTCTTCAGATTAAGAGAAAGAGATTGTAAAGTGAGTTGTATTCATTGATTTAGGGATTGGGAGTGGGAGTGGCCAGCCCTGGTATTGATGTACACGGGGGGGATGTAACTGTGACTGCATTATTGGTCTTCATTGAGCCCCAAccccaagaaaacaaacaggctcTGTAGCGGCGTCCAATACGGACCAGGTCAGCAGGGCTGCTGCCTCAGAGACCAGTGAGTCACGGACAGGCGAGAGAGGAGGTACGTGAGCAGAGCGCCAGAGCAGAGTGACCAGGGCTGTGGGGGGAGTGTCAGTGTAGAGGTCCTGGGGAGAGGGGGGCCATCGCTCTTTGAACTCGGCATCAGTGAGCACATACCACCCACCCACCCAGTAGCATTAAGTGATAAACCGACACGGAGGACGTGGGAGAGCCAGTGTGCCCCCCAGGTGTGCCTGCTTGTATCTCCCTCTTCAATGCACAGTcaagtgtagtaaagcacagtgaaattGACGTAAGTGTGGCGAAAGTGCAGAGACGACGGTTAAAGCACGGAACAAAACTGACGGGCTCCACCATACCTGCCGAATGAGGCGTTTGGAGATAGACTTTGGGCTTTATTGAtttcctgcttttgttttcactttagaGGTGtgacttttctctctctctctctctctctctcatggtaTTGCctttggtggtggtggcagtgtgtgtggttGGGGGGAATGGAAGCAGCTGTTTAGAGGTGTTGAAACTGCGCTTGCAGAAAGAGCTATATGGGTTTGACTTGGGGAACTGATTGCATGTGTCCATCTAATTTGCACTAAGCTCCCTCCTGCTCCCGGTGTGGCTGTGGCCCCTGTGTTGGAGGAGATGCAAGAGATGTCTTGAGAGATACAGGGGCCCCAGCTGGCATTCCTCCCAGTAGAGAGTCAGTCTTGGTGTAGCGTTGGCACACTTGCTGGTCAACAGATGAAACCGGATTTATTTGTACCTTTTATGAGAGGGGGGGCAATGAATGCCTAATTCTCTCACTAACAGCAGAGAATGTGCAACCTTCCATTTAAATATAAGTGAAAGGTAGAGGAACATCGACagagtgatatatatatatatatatatatatatatatatatatatatataagttctGTGTCAGCTTCCTGTGCTTAACAGAGATCTTcatatatagttaatttaaacTATAATCCTAATTTTCATTTAAGCTATACAGACAAATTGGAAATTGTTTTTCACAGTGTACAGTAGCAAATGGAGAAGGTCTTTAATACCTGCCCAGTATTCTTTGCCTTGATGGTGCAGATTAATACTGATGTGCACTTGTCTGCAGAGGGACTGTTTTCATGCGCAGTATTAACTGGAGAGGAGGATGATGGATCTATTGAAGTGGCGTACGGTATTGAGTCACAGGGCGTACTGATCTCCTTATTCTTCATCGATGCCTATTGACGAGTCTTCCAGGGTCTTGGCTCCGGCCAGTTCCTTAATGCACTCACTGAGCACGGTCTGCCTGCGGGGCGTTTAGGGCAGAATCCAGCCCTCTTTCTCTTGTGTCGGAGATGCAAATGGAGAGAGTGTGGGAGTCAGGGGACAGTGGGCGCTGGCATAGGGGTTTTCTGTACAGATGTAATGCAGGgtttttcctattattattattattattattattattatttgtttttacgtGTAGCTAAATAAGTCTCTTGCTCAGCTGCAAAGATGGACCGATGCCTTCCTGGAGCTGAGCAGACACCTGATTGCACGCACGAGTGTTGTAAAATTTCAACGTGTAccatacccccccaccctccaccctcCACACCATCCCCCAGCTCTGGCGTTTGCTGTGCCTTCTCACACTTTGTTGCCCATCTCTTCTGTAGCCTTGCCCATGTGTAGGTGTTGGCATCCGTCACTGGGCTTCCACCGGTCACCTGACTCACCCAGTGCGTGTGATGCTTGTTCGGCAGGGCTTGTACCCCCAGAGTAGCagtgacgtgtgtgtgtgtttatttgatgcTGCTTTACTGTCGTATGCTTCACTGTCACAATGTGAGCTCACCGGCTGTGTCCTCTCACCGCGGCAGTGCTGCTGGCCTCCGTCTGGTCAGGGCTGCCGCTGTGGTAAAACGCCCTCTCAGCGCAGTGCCATCGCTGGGCACACATACAGGTTTACAAAGCTGGTGAGTCTTGAAATGCAGAAATTAGTACGATTTGATTAAAGAGCAGTTTGCAAACCCACTGGAGAATCATCCTACCTTCAGTTTGGTGTCAGTTTACTACATTTGTGGTCTAGttcctctttatttatttattatgatttaaacgCATGCTTCAGCTTGTCAGAACGTTTCAaattcatttcatttctgttgaaaaactaaaaacagatcaATGTGAACGGCATTACCAGAATTGGTATAGAAAGATTCCGCAAATAACTGACTGACATGAGTGTGGAAATGTGTGTTGATGTTTTGGAAAAGCATGCAAAGTCTCCTGTAGTGCTCGGCGTTAGCAAAACTGTCAGAACTTCCCGATGAGAGTTCTACCTCGTATGCTGACTTGCACACAGTACCTAGTGATGAAGACCTTCCTTTGTGATGTTGCTGGTGTTCTTGCCATTTGGAccaacatttaaaagtgtttattcTTAGTGTTAAAAGACTGAGATTTAATGACCAGTAAGCTGGATATCAAACTTCAAATTAGCCcataaaataatgtgtgcaTTTACAAACCAGGGGACTGGACATGCTGCAGTGTACAGCCTAGACAAGAGTGAGCTTTCATTCTTGAACCTCAGCACTAATCACTAGAcctaaaaaagacaaacaatcaTATGTAATTTTAACTGCACACCTTTGTAAACAGTATTGTAGACATGGTGTTTTTGTAGTTTGTCAAGACGACCCGGCCCTGGCACAGGAACATGGTTCAAACCCACGGGCAGAGAGTTTTTTCTGCAGTAGTTTCTCGCATCGGCCTCTGTAATAAACTCGCCCCCAAACAGCAAGGGCACAATCACGTTCACACGTCTCCCAGTGTAACCAGCTCCCTGGTAGCTTAGTCCTATACTGTGTCTGTTGTACTGCTTATGAAACCCCCATTTCAGTAGTGCTGTAGATCTGCCTTCTCACTGGGGGGTCCGAGCCCGATCCCCATTCACACTGCCTTCGATATTAAGCTAAGGATGCTGCATACAATTCCAGTGGTTCTTTTGCACTGGGAATAAATACTTAACCAGTGAACCGCGCTGTTTATACCTACGTATGGCTCTAATTAATTGCACTAAGCTAGTTACACCAGCTGCCTGATCAGTCACACACCATTTTAATGTGTTGGCCCCTCTCCTGGCTGTCTGTGTTCACTGTACTCGGCAGTGTAGATTTGCAACCCAACCGAATGGCAATTTTTCAACCtcaaaacaattttatttgaataaaccAGGTTATAATTGGCAATTAATAATACTGCTTGGCAACAGATTCCTAATAAATTAGTCCGAGCCGAGTGCAGAGTGCGTAAGCGGATTTGGAAGTTTTGGATTCACAGGATCCCTGTTTTGAAAACCTGTTTTGACACTGCGCTAAAAAATTGGCCAATGTGCAAATACACACTCCCAGCCTGCAGAGACCCCCCCTCACAGCCAGGACAGGGGCCCCCATCTTTAACCCAGAGGGGCTCTTTTCTCTTCAACTGATGTGACTATTAAGGACTTTTGCACTCCCCCCCCCAGTTATTCAAACTTAATCCTATTGAGCTTCTTTTTGTGGACTTTGAAATAGTGACAATGACCTaacaggaaaaaactaaaatgaaaaaaacactttaagggcttttttttataataaaatgaaaagatcagaatgttttgctgctgttgcgcaaaaaaaggacaaaaaataaaataaaagaaatcctttgtaatatttttcaaCCACTGTGATTtgtacaaaaaggaaaaaaaggtagttttttttttttttttttttgccgttTAAGTATTTCAATGTTTGACTTGACTTTTAATAAAACCTTGCTAAAGTCTTTGATCCGGCTGTGTCTGGGTTttcatttctataaaaaaaaatcactcca

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95334 lncRNA upstream 281446 5462523 ~ 5462811 (+) True G76346
TU95253 lncRNA upstream 496076 5243727 ~ 5248181 (+) False AMCG00009897
TU95233 lncRNA upstream 515471 5158388 ~ 5228786 (+) True G76266
TU95199 lncRNA upstream 823411 4911270 ~ 4920846 (+) False AMCG00009898
TU95119 lncRNA upstream 1490703 4253237 ~ 4253554 (+) True G76186
TU95417 lncRNA downstream 16665 5767877 ~ 5769052 (+) False AMCG00009915
TU95419 lncRNA downstream 19043 5770255 ~ 5771092 (+) True G76417
TU95420 lncRNA downstream 20462 5771674 ~ 5771949 (+) True G76418
TU95439 lncRNA downstream 24744 5775956 ~ 5776174 (+) True G76434
TU95468 lncRNA downstream 146098 5897310 ~ 5900982 (+) True G76460
AMCG00009916 mRNA upstream 115 5717698 ~ 5744142 (+) True AMCG00009916
AMCG00009914 mRNA upstream 141274 5595438 ~ 5602983 (+) True AMCG00009914
AMCG00009911 mRNA upstream 150250 5562975 ~ 5594007 (+) True AMCG00009911
AMCG00009909 mRNA upstream 218695 5509084 ~ 5525562 (+) True AMCG00009909
AMCG00009905 mRNA upstream 284373 5458286 ~ 5459884 (+) True AMCG00009905
AMCG00009915 mRNA downstream 15125 5766337 ~ 5768059 (+) True AMCG00009915
AMCG00009919 mRNA downstream 35213 5786425 ~ 5794926 (+) True AMCG00009919
AMCG00009923 mRNA downstream 139068 5890280 ~ 5894977 (+) True AMCG00009923
AMCG00009922 mRNA downstream 181809 5933021 ~ 5940090 (+) True AMCG00009922
AMCG00009926 mRNA downstream 235055 5986267 ~ 5998592 (+) True AMCG00009926
TU94664 other upstream 4380423 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4409207 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4416693 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 4706815 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 4872522 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 5398414 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 5949494 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 9889749 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 10306319 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 11472670 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile