RNA id: TU95468


Basic Information

Item Value
RNA id TU95468
length 3554
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G76460
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5897310 ~ 5900982 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGCTGTCAATGTGTGTGAATACAGTGTCAGACTGCTTTAatgtccccccccacctcccactaAGCATTCACCTGCCCAACATACATacgcacacatacatgcactGGGCCaccacgcacatacacacacacacactcctgaaCTGAAGTGCAGCTGgtgtgtgtctctccctctttctttccctctccctccccctccccctccccctctttccctctctctctgctttttacAGAGTGGGAGGGGATGTGGTTTGCAGGTGTGGGGACATTCAGGAAACCCTGGATTCCCCCCAACTTCCGAGCCAGCCCAGGGAGCATGGCTGCATGTCTGGGATTATTTCTCTCATTTAGGTGGATGGATGGGCTTTTTTTTGCCCCAGCAAGAGCAGTGGGTAGTGTGGTCTGGACGACCTTCTGCTGGGCTCACCTCCGAGGGAACTTTAAGGTGAAGGACAAGGAATGATAAATTGCAgtcaagcaagcaagcaagtaAACACAGACAGACGAGCTCAAGCAGGACTGCGAATGTGAGGGGAAACGTGCCGTGTTGGCCTGGGTTTCAGTGCTGGAGGGGACTGGCTGATTTGGCCTTTGGGATCAAGGCTTTCACAGCTGGGCTACACACAGGCAGAGGAAATGTCCTGGTTGTGTTAGTAGGACTCGTTCAGCAAGGCAGGAAAACCCCTTTCTGGGCCCTTCTCCTTCGCCTGGCCACAGTGCATCAGTGTGGATTCTGTGTAGGCCACCTCGCTGCAGGTTTGAGCTCACTGACATGACTCCAGCAGCATGGGACAACAGAGAGACCCTGGACAGCTGGGACCGAATCTTGTGCTGAGATTTGCTTGATTACTTAAACACGATTGCGGCTTAATTTCAGCTTTCTGAAAccaaggaggaggaggatttGAGGGGGGGGGACCTCAAAACAACCCCTTATGTCTTCACAGAAATGAGAGAGTggagacgtgtgtgtgtgtgtgggggggtgttctGTAGGTGGGCAATTTTTTggatcacaaaagaaaaaaactaaatattttggaTCTGCTTTTATGTTAAGTGTCTTATCATTCATAACCCAAACCAGGAGCAACGTCAACTAGACTTACCAGACTGAGCCTCTTCTACTTATTCTGGGGATGGATTGAGAAGATTGAGAAACAGCAGCCATAAAGAGCCGTGCACTGTTTAAACCCCCCAGAATGCAGAGTGAGGTGTCAGGCTGGTGGAAGCTGGGTTCTGCAGGTGTGATGTAATCAGTATAGGTGTGAGCAAGACTGGGGCAATGCCACATCCCTCAGAAATGaaaagaggtgtgtgtgtgtagtgaccAGAGGAAAGGTTGGCCCATTAACtttggtaataaataaataaataaatagtgaCCCCCccataaaagtgtttttttttggtttgtattttgctcGCTTCTCATACTTTCCGTGCCTGGAAGGAACCATCAGGGCTGATCACACAGATACTCCAGGTTGGCCAAAAGTTAACCGCTCCCTCCTCTGAGTCGTGGTGTTACAGCTCACTGAGGCTGTCACCGCACTGTTTGTATACAATCTGgagattgtaaaaaaaaaaaaagaatacttaAAAAGTGGGGATTCGAGGAGTTGTCTTAGGATCCAAAGAATGTTTGTGCTGTGCAATTTGATCAACgattataatcttaaaatgctTTAGCAGAGGACTCTGGCTCCTTATCTGAGAGGCAGCCTTGGGAGGCTTCAGAATGAGGATGGAAACTAACCTGATATTTTACCCAGCCATTTGAAAGACgaactgtgtgtgcgtgtcattTTTGGGCCAGCTTGCAGTTATTTGATAGAATCAGTCAAACAAATAACCATTTTCAGGAGTTATAGTAAAGTGACTCTCTATGTATGGTGATGTACTGGGTTATAAACTTATTATTAGATATTCTTAAGTAAAACATTGTTCCCCGTGTTTAATAGGAAAGCATCACTGCCTTTCCTAAATTTCCCAATGGACTGGACAAGTCAACTCACCCTTCCATTAGATTTGAACTAAAAAGTATTAAGAAAATAgactaaaaattaaaaaaaaaaaaaaatctcccacagagagatgcagatcccacagagagatgcatctgctACAAAATACCAAGCACTAAATGGAGCAGACTAACACTTTTCCATCACATAGCTTGGCCAGTTACAGAGTGCTAGGCCTTGTgtagagtggaaaaaaaaattcaatttgTTTCTGGGTGCTCATTTAAATATAGATAAACTCTTTATTGGCTTGTAATTAGCTTAAAAATGTACTGCATTGATTGACACCTGTCTGATATGGAAGTCAGGGGAGCAGAGGTGTTTGGGGCTGTGGACGCACTGCTGGGCACCCTGGGGGTCACCTCCTCAGTGGGGGGGGAGGGATACTGCATCAGGGTGTGCCTTTTGGGAAAGTGAATCCAGACCATGTTGCTTATGTCACCTTTTTTGCTCCACAGCACTTGTGTGTATTAATGACAGAATTGTCAGTTGTCGCATGTTTGAACTCATCCTTGTGCCACAGTTGCCTCGCAGTGTGCCACATCTGTGGGTGTTTTTCCTCCTTCTACTCTTAGAGTTGAAGGAGTAATGGGCAGAGTCAGTGTCTTCACCCCGCGGTCCACAGAGAAGCCACAATGGGACGATGCTTTGGAAGAAAAAGGCTTCCTCCAGTTGCCAGTGCCCCAGTGACTGAGGCTACCCGGTGTTGTCATTGCTGCAATCCTGCATTTGAGCCACTGCTTCACTGAAACTGCTCTGTGGAAGAACCCAGGCCGCTCTTACTGCTTGGGCCCCTCATCCATTTGTAGCTCCCGGTTTCCTTTTCAACACGTGAAGTCCATGTCCAGACTGCTGCCCCAGGCACTGAAGCTGAAGGCCCTGTGACTGTCGCCACCCAGTCTGGCCACAGCTATCTGGCTTCTCCTGACATGAGGGGATGCCCATGGAGCTGTGGGGCCCTGGAGGAAGGAGCTCAAGCCCCAGTGATCCCTGCATGGCTTCCATGGGGGGCAGACCTTCTGATAGAATGGGAGAGAGGAGGCCAGCCCTAACTACCCCTTGGTCTCCTGCCGAGACTGGCAGCCCCTGCAGAGCAAGGACGCCGAGCCACAATGCCCCTGCAAGACTCGCATCTTCAGAATGAGCGTACAGTGGACCAGTGCAGTGTGGTAAACCCAGGGGAATATTTTTctcccttctcttctctctgcTATGCTTGACCATCTTTCTTCATACACCTCCTCATCTCATTGGGTGGAGGGGAACGCAATCACTGAGATGACTtgttataaaagaaaatgacaaagcGAGGAATTTGAAGTAGCAAAGATACTGAAAATAGAGGGCTCGAACTGCCGACTGCAAACAGAAAGATCGCTAAATAAAGGAAGCCCCTCCTGAAAATGCCACATTTTACAGGTTTCTTAATAAGTGTGTCTTGACTTGAAATTCCaccacttttatgttttacttttttttttttttgtccctggTTGGTATAGTTTCTCTTCtgcattcccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95439 lncRNA upstream 121136 5775956 ~ 5776174 (+) True G76434
TU95420 lncRNA upstream 125361 5771674 ~ 5771949 (+) True G76418
TU95419 lncRNA upstream 126218 5770255 ~ 5771092 (+) True G76417
TU95417 lncRNA upstream 128258 5767877 ~ 5769052 (+) False AMCG00009915
TU95410 lncRNA upstream 146098 5744257 ~ 5751212 (+) True G76408
TU95493 lncRNA downstream 44724 5945706 ~ 5946053 (+) True G76484
TU95496 lncRNA downstream 46896 5947878 ~ 5950820 (+) True G76486
TU95533 lncRNA downstream 182869 6083851 ~ 6085782 (+) False AMCG00009929
TU95571 lncRNA downstream 260474 6161456 ~ 6166615 (+) False G76550
TU95570 lncRNA downstream 264340 6165322 ~ 6166615 (+) True G76550
AMCG00009923 mRNA upstream 2333 5890280 ~ 5894977 (+) True AMCG00009923
AMCG00009919 mRNA upstream 102384 5786425 ~ 5794926 (+) True AMCG00009919
AMCG00009915 mRNA upstream 129251 5766337 ~ 5768059 (+) True AMCG00009915
AMCG00009916 mRNA upstream 153168 5717698 ~ 5744142 (+) True AMCG00009916
AMCG00009914 mRNA upstream 294327 5595438 ~ 5602983 (+) True AMCG00009914
AMCG00009922 mRNA downstream 32039 5933021 ~ 5940090 (+) True AMCG00009922
AMCG00009926 mRNA downstream 85285 5986267 ~ 5998592 (+) True AMCG00009926
AMCG00009929 mRNA downstream 158260 6059242 ~ 6085806 (+) True AMCG00009929
AMCG00009930 mRNA downstream 211314 6112296 ~ 6149391 (+) True AMCG00009930
AMCG00009928 mRNA downstream 249036 6150018 ~ 6154858 (+) True AMCG00009928
TU94664 other upstream 4533476 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4562260 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4569746 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 4859868 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 5025575 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 5248644 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 5799724 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 9739979 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 10156549 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 11322900 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile