RNA id: TU96132


Basic Information

Item Value
RNA id TU96132
length 3420
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G77012
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8314116 ~ 8317675 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaaatgtgtaacacttttttaatacaggaatgtttttatttttcattgttctaTACATCATTGTCATTTTTAGTTTGTAGTAACAAAGAACCAGAGATTAACCCTGTAGAGCCCCGTGTCTTGTCTTTTGTGCCAGCTAAGCTCTCTGTTATTCAATTAAATCCTTCTCTGAACTGTTTCCACACATTAAGTAATTTACCCATAATTTAAAAGGTCCAACTAAGCAATTATAGTGTAATTATGTTTCTActttagagctcatctggatcaAACTCCTACAGACAGGTCtatcctccaggaccagggttgccAAACAGGACTATAATGTAGAGTGTAGCTGACCATAGTTTGAAATCTGAACATGTGGGCCTggaatgtaattaataatatatatttaaaagcatgtcAATGTATTTCTGCACATTTATAAAAACTTTTACATGTATGTTGCATGTTGGTAATGAAATTGTTCAACAGACACCCCTAAAACTGGTATTAAAGAAAGAATTGtcaacaacaatactaataatataaaaccacCACAGCCATAGTCATTCAGTATTTACTAGGAATTAATACAGTTATTATAAAGTGCAAATAACTTCACTTTACAaattataaagacattttccaaaatgGACTCTGTGCTTCAACCTATATTCACTTTTACTGCAGTAAAACACTGGAATTCAACTGGTCCATCTAGGTGCAAAGAGCAAGGAATAAGAATTTGgtcatataattgtatttgtactcAAGTACATGGGGGATTTACAGTGAATACACCTCCTTTATTATATCTATCCAAAAGTCCATCCGTTCTCCCAGTTGATGCTATAGAAAAACAGATTTGCACATCAttctgttgattttgttttttggtaatgACAAGAGTGAACAACACCCAGTGGACGGGTGAAGAATAAGCACAGATACACATACTGTGCAAAGTGTTGCTGCTATAACCAACTTTCACTCTAACGCAGCATGCTGAAGACAGCAGGACACTTTTTGTAGATTAGTCTGCACAGCCTTTGCAAATCCTAGATTGCTTACATATGTTCTTATCAAAAtcacaaattatgcaaatgtagtGCGATTAGTACCTTATTGTGATGCATATTAATCTGattctttatgaaaatatagTGGTTATATCTGCAAGATTTTCTTTTAAGTCTAAGATAACCACAAAATGATTTAACTGCTTGTGAAATGATTTTCCGTAAACAACCGGAACAAGGACTCGCCAAAACAGAGCAAAAAGCGTGAAACATATTTTCAGTTGCTTTTGTTAGCCATTGTTATAAATGAGGAAAAGCTTACTCCAGTCCAACAGCTTAATGAACATGCTTACAATTTTTCACGTAATGTCCTTGCAGACATGTTGATTGTCTGGTGACCTTCATACCTCGTCTTACATTCCTGAGTGTGTACAGGTGATTCAGATTTGAATTCCTAAGCCTTGAATATTGGCATCTGCTGTACGCAATACACATTAGTTAAGGAGCAGAGAGATAAATGCTTCCACAAAGGGTATAAATCATTTctatacacagtatataaaaGCACTACACTCTAATGAATCAATATCTTCAGAATAGCCAAAGGTTTCTTATTAGTGCTTTTATTACTAAAACTCAGTACATTACACTGAATGATACGGAGAAGCATCATGCCAGCCTTCAGAGATTTATCTGAGCAAGCCTACATCCTCGtaatgggatttaaaaaaatgtttctgaccAACATGAATAAGGACTGAGCCTGTAGTTTATCTAAGTGCATAAACAAACACGCAGGCCTTCCCTGTGCAGCTGATAATTTCCCGTCCCATCAGAAAATTCCTTTGGCTTTCAATTCCTCTTGGACACGGCTGAGATAATCTGGATCTGGATATCCATagACGTTGCCCCCCCTTGCATGCTGGTTTTATGGTGAATGTCATTCCAAGTGACCACGTTGCTCCTGCCGGTGGTCGAGGATCTTCCAATTGTGAAAATTAGCTTTTGCTTAAAGGCCTGCTGGAGTAGCTTCAGTACCTTCCTTCCCTCTGGACAGTCGGGCAGATAGGCGGTGCGGGACACCCCCTCGTACCTCTTGCCAGGCTGTGGATGCTCGTCCTGGTGTACAGAAGTATACATCGAAAGGTGACTGTTCATCTACTTACAAAGACTGCTTTACACATGTAAGGGAAGCGGACAGGGTCACGTCAGAATAAGATATTTCttcactgacaaaaaaaacgaaacacaaTAAGACCCTCTAAGCGTATAagatgtgtatatgtatacttACAGTTTGAATTCCACTTGGTATGTGGTAATATATTGTAATCGAACCATAGCGCTCATATCCTGGCAGAGAGCTGGTTGTGGTGGTTACGTCCATTGTGCCATTGTCAGGCTGGGTGCCCTTGAGCACACCATATATGACCCCACAGACTGGACAGGTAGGTTTCACAGCAAAGGCAGACTTTAAGCAGTCTTCACAGAATGAGTGTTTACACCGGGACAATGTCGTCTTTTTGGTTTCTTCGATGGTTTCCAGACAGATCGGACAAGTCTCCTCCGTGGCCACCTGCCGACTGTGGACCAGGGACGAACTTGCCGGACCAGTGCCTGGACTCCACAGCGCCGGCCTCGCGGGACGTGCCTGGGTGTCtgtgtaagccatgtttcttcCTGTAGAGTGAGGGGCGTTAGTCACACCTTTCTGTAAGCGGTCGAATCTCATTATGTCAGTATAGCTGCCAGTCACAGAAACAGTGCCCTTCCTTTGAGTCATCAAAAGTTTTGGCAACTCCTCTTGAAAGCTACTGTAGTGAGCTAACCCACGGTCCAGGCTGTAATCCTTCATTTGCAGGTTAGTCATAATCTTCTGATACAGATTTATaaacctctctctcacacagtgaCATTCTGCACTTGTTCCCTTTTCAGATTGCTGTGGCTGAAAGTACACCGTCTCCTTACTGCCTTTGGGGGACCTTTTCATCGCAACCTTACGACTCTGGATGTCCTGTAGCTCCCTGGAGTATTTTGCATCAATGTACTCCATGATGCGTCCGTCAACCTCGACTGGCTCCAACGCACTCTGGTACAGAGACCCCCCGTCGTCCTGACTAGCTGAAGCATGTCTGGAGGCACGCTGGGATGCTGTTGTGCTAAACATTGATATATCTgaatatagtttatttattgcttCAAAGGACCCACTGACTTCTACAGAGCTGTCTGCCTTGTGTTTCACAGTAAGGTCATGGCAGTTCTCAACTATTTTCAGGACTTGATCTTGTTTGAAGGCTGACAATACAACTGTCAGTTGCACATCTGGAAATATCTGCAcacaaaagtttaaaataataggATTAATACAAACAGCAAAATAATGTTGTAGGATGCATTACTAAATGTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96033 lncRNA upstream 419726 7889483 ~ 7894390 (+) True G76935
TU95949 lncRNA upstream 661285 7651722 ~ 7652831 (+) True G76864
TU95947 lncRNA upstream 663925 7649490 ~ 7650191 (+) True G76863
TU95942 lncRNA upstream 665950 7615958 ~ 7648166 (+) False G76859
TU95941 lncRNA upstream 665950 7646321 ~ 7648166 (+) True G76859
TU96148 lncRNA downstream 120832 8438507 ~ 8438786 (+) True G77028
TU96169 lncRNA downstream 380003 8697678 ~ 8700117 (+) True G77049
TU96195 lncRNA downstream 490676 8808351 ~ 8808607 (+) True G77073
TU96266 lncRNA downstream 886667 9204342 ~ 9205423 (+) True G77126
TU96265 lncRNA downstream 887960 9205635 ~ 9208519 (+) True G77125
AMCG00009988 mRNA upstream 3846 8270117 ~ 8310270 (+) True AMCG00009988
AMCG00009986 mRNA upstream 109983 8156818 ~ 8204133 (+) True AMCG00009986
AMCG00009983 mRNA upstream 194798 8118435 ~ 8119318 (+) True AMCG00009983
AMCG00009982 mRNA upstream 231508 8075205 ~ 8082608 (+) True AMCG00009982
AMCG00009985 mRNA upstream 260323 8034623 ~ 8053793 (+) True AMCG00009985
AMCG00009991 mRNA downstream 77277 8394952 ~ 8395968 (+) True AMCG00009991
AMCG00009990 mRNA downstream 87168 8404843 ~ 8430633 (+) True AMCG00009990
AMCG00009993 mRNA downstream 351200 8668875 ~ 8696061 (+) True AMCG00009993
AMCG00009992 mRNA downstream 406617 8724292 ~ 8760028 (+) True AMCG00009992
AMCG00009995 mRNA downstream 451802 8769477 ~ 8776011 (+) True AMCG00009995
TU94664 other upstream 6950282 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 6979066 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 6986552 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 7276674 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 7442381 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 2831951 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 3383031 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 7323286 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 7739856 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 8906207 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile