RNA id: TU96265


Basic Information

Item Value
RNA id TU96265
length 2771
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G77125
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9205635 ~ 9208519 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTTTAGAGAGTTTATTCACAAaaagatgcaaaacaaaacatcttatCTAGGACAGCACATTGGTAACAGTGAAGATCGTTGCATGATTCCTATAGGTTTCATTTGACTTTCTTTCGTATAGGCAGAGGTCATGTAACTGCATTTAGCCTTAAAGCAAAGCAATTAAGAAAAGTACATTtctgggaaaaacaaacaaaattgtttATTGCTTCCTAACCAGCTGCAACCTGGAAAATTTAATGGTTGTTTAAACCGTAATactaatgtattaaatataatataattcaacCTAACATCTTCTCTGGAAGCTTGAGGTAAACTGAAATGTACAAAGTAAAATGTCTTGAATACATACGATCAACAGTGCCATctagtgcaaaacaaaaaaagaccaGTCATTTGGTCATACTGTCTGTAACTATAATCATTATCCAGTTTGTATGGAGCTCAACAGTTTACAGCAAATTATACAAGTAACTCCCAAACTTTTCTTTTGGTGATTTGCTAAAAATGAGTTGATTGTATAAAGTTGAAATGTAGAAACAACAAAGATTAATGCTTTTCACAGAAATAAGGCTTTTCACTGGGTAACGATGATTACAAATGTCAGAAGACAGGTTCCCACACTAAGATGAAGTGAAGGGACATTTCAGTAGCATCAGAAATCCTCTGAAGGTTCTTGCACGCACAGGGGATGCTGCACATAAAAGCAATAGCATCCATACATCTATAAAAACAGTGACCAGACTGAGGAACCTACTGGTACggacaaatattaaagtgcataaatatttccttttgttCCATACAAAAGAAGTGCAAATAAAGAAGTGGCATTCCAAGTTCCACGTTCCAAgttaaacatttgtttctacATGTCAGAGGAACATGTTATAATGGACATGTTATCGAAGTAGAGAATCTCTCTCTGGTTTCTTACACTTAGTATTCTTCAAGTAGTCAGAGGATGTGTTTACATCTCTGTATTAGAATCCTAAAAAGAAACCTACACACAAATTCCAGACTCGAAAAAATATACCTTCATCCTGACgtatatcattatttatattcctacagattacattaacattctGGTGGTTTGATTTCATATTCATGTGCAagatacaaacacaataatgtTCACTCTTTTCTATCCACTTTGAAATAAGCAATGTTCCCACAGATTGACGGGCAACTCGGTAAATAATCACAATGTTTTACCTCAGTGCGAACAAACGGAAGAGTATTACTCAGATCGCTTCTCACAGAGTGTCAGTAAATCTAGTCATTGATACTTCAGACAAAGGATCCTACTAATGCACTGCCATGTATTAGCAGCAGACCTGCAAGATTGGTTATGAGAAAAAGCTTTTCCAATCAACCATGGCAATTAGGTTACTAGACCTGAAAAGCGATTATAGAATACAATTCatgatttagtattttatttcagttttctcaGGATAATATTCTTTTCATGGCAGTTTAAACAGCTTTACCTCTTAGGGTAGGAATGCTTTTCAAATGAGATAAAACTGTTTGGGTTAGCATGCACTTGAAAAGCGCCTCATCACCTTTAAGCAGAGCAATGTGCACAAATATGGACGGATTCTACTTATTCCTGATTCGGAGCCACAGCGCAGCCACGCCCTCCTTGAAACTTACTTACACACGCTTCCATGAACCATTCCAGTTAGGTTAACTGCACATAATACACAAGCTGCATCTCCTAAATATATGGCCATCAAACATCGTCCTTGAGTGAAAGTCAGCCCTCAGAGCGGCTTAATAGAAGAGCAATCGAAAAGGAAAGCTGCGGACAATAACAGTTGACATCTAACTAAAGAATCAATATGTGTAACACACCAGCTGCGTGGCTTTAAAAGCGACGCAGCACCCCGAAAGGCGTAGCCGCTTGAAGATGACAGAGGTGCCCGTCTCCATTTTGCCTCCTAACCCACGATGCCAGTGCTAAGATGGCACATCATTGAAAGGCAGTCTGGTGTCGTCCTCCTCCAGCGCGTTATGAGAAGGCTTGGCGGGACAGAAAGCCCACCTCAGGAGGGCTAAGGTAATCCTGACGAGGATGCGGAGGGCGAGGAAAGCGAAGGGCACGCCGATTTCCATGAGGTGGAAGATGGGGGCGCTGAACTGGCTCAGGATGCACGTAATGAAGAAGGTGCATAGGGCGACGCAGGGGTACAGGGAGAGCTTGGCGAACATGAAGGCGTGCTCCTTGCCTCCGTACCTCACATAAGGGTGCAGGGTCTCCCTCTCGTTGAAGAGTGCCACCACCCAAATGGCCAACTGGAAGATGCCCGCGAAGAAGATGATGACGCAGCTGATCTGGATGGCCTCCAGCTCGTTGCGGGACTTCTCCGCAAACTCGTGCGTCAGCTGGTAGGCCAGAGGCAGGCCGCCCACGAAGGCCAGGGAGAAGGTGTTGAGCAGGCCCATGAACCGCGTCGCCTTGGTCACGTGGAGGAACAGGGAGTGGTGGACAAACCACAGCAGGCCCACCGTCACAAAGGAGCCGAAGTATGCCAGGTACTCTGGGCCAAAATTTTGCAGGGCTTCAATCAGGCTGCCGTGGAATTTCTCCTGCACCTCCCTGGGTTCAGGTACGTTGTCCTCACATGTCAAGAATTAAAAGTGTTGCCACAATAGCGTATACACCATCGCTGAAGGCCTCTATGCGCTCCTTGCTGAGCGGCTCTTTGGGATGGTATGTGTAGTACAGCATGCTCTCTGGCGGCTCCTCCAGCTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96266 lncRNA upstream 212 9204342 ~ 9205423 (+) True G77126
TU96195 lncRNA upstream 397028 8808351 ~ 8808607 (+) True G77073
TU96169 lncRNA upstream 505518 8697678 ~ 8700117 (+) True G77049
TU96148 lncRNA upstream 766849 8438507 ~ 8438786 (+) True G77028
TU96132 lncRNA upstream 887960 8314116 ~ 8317675 (+) True G77012
TU96276 lncRNA downstream 143072 9351591 ~ 9351870 (+) True G77135
TU96341 lncRNA downstream 207911 9416430 ~ 9419370 (+) True G77192
TU96347 lncRNA downstream 220724 9429243 ~ 9431629 (+) True G77198
TU96350 lncRNA downstream 309139 9517658 ~ 9518012 (+) True G77201
TU96357 lncRNA downstream 352790 9561309 ~ 9561806 (+) True G77207
AMCG00010002 mRNA upstream 1536 9178039 ~ 9204099 (+) True AMCG00010002
AMCG00010003 mRNA upstream 33987 9073241 ~ 9171648 (+) True AMCG00010003
AMCG00009998 mRNA upstream 135934 9058476 ~ 9069701 (+) True AMCG00009998
AMCG00009999 mRNA upstream 207767 8980755 ~ 8997868 (+) True AMCG00009999
AMCG00009997 mRNA upstream 227247 8977954 ~ 8978388 (+) True AMCG00009997
AMCG00010005 mRNA downstream 138507 9347026 ~ 9350311 (+) True AMCG00010005
AMCG00010007 mRNA downstream 151597 9360116 ~ 9375744 (+) True AMCG00010007
AMCG00010006 mRNA downstream 184362 9392881 ~ 9414133 (+) True AMCG00010006
AMCG00010012 mRNA downstream 463702 9672221 ~ 9688099 (+) True AMCG00010012
AMCG00010013 mRNA downstream 482054 9690573 ~ 9713280 (+) True AMCG00010013
TU94664 other upstream 7841801 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 7870585 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 7878071 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 8168193 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 8333900 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 1941107 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 2492187 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 6432442 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 6849012 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 8015363 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile