RNA id: TU96341


Basic Information

Item Value
RNA id TU96341
length 2941
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G77192
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9416430 ~ 9419370 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGACATACataactttatttatgttttttaatagttCATAAAGAAGGTTGCCTTGCAGGGAAACATTACAACGAAGCAAGCTTATACATCAGTAGTGAGAAGTGCCCTTCACAGCTTGACTGTTTATGATGTCTGGAAACCATTTGTAAAGCATTACCTGCTATACAGCAaccacatttcaaaatgaatcatacaaagaaatgcaacatacataaaataaataaaatgcctttttaaaagttcctttccatatacaaatacatttttatgaagcTTATTGTACAGGCATCTCCTTTCCTTAGAGCTAACCATTTACAAGAAAGACTTTACAGTGTCATAGAAGAAGCTTTTCTCTATATACTTAATCCatcatataatacaaatgttataaGTGTGATTGGACAATGAACAATTGTTGCCAATGCAGAACATAGGGatctttatatgtatttatatatatcaatatatatatataaatgttatttttctcaaCTGCCACATGtggtaaaacaaatgtattaaaatactaaatacagactgattgtataaatatagatcattacatttcttttcttttgaaacatgcaaaacaatagtATGTTTTTGACTGCGATGGCAAGAGACAAGGATGCAAAAGACATCTACAAAATATAAAGGTGTCCAATGTGTATAGAACCTATTACCACAATTATCTTTGCACAAAGCCACTGCATACCAGAAAGAAGTAAAATAACCTGTGATAACAGtatgcttttgaaaatataatttgaaaatgaaaatcacaatTGGATGTCTGATATCTCGtgtcatgttaaatatatgactATGCGATGTTTCAAAAAACATATTGCAAGTCAAATCCAATCAATAAATGTGATTATGAAATTATCCTCTTCTGAATTAGGTCTTTTATATAATAATGCGAGCTTATTTAAGAAATAGGCTATATACAAAACCAATATACATatctataaaatgtattcaactataaaagaagaaaagaaaaagaggtgTACACAGCTGTCAGGGAAAGAACCCCCCAGCCGCTCTTGGATATCTCTTCATCTTTGCAGCCTTTAAAATACTCTCAACGTCAAACAGTGTCATTCCAAaggttaaaaagtaaaaaactatatctatatttatgaATTGCTCCTAAGCTCTCATAAGgatgactttttaaattatatccACAGTTATAGTTATTCACAACTCTTCATCTGAAAGAACATGTATTGGGTCTTTTCTGTACTTAgcaatagctttttttttcaaatgtaatattcctGCCCCTATCGACTGGAatctgtcatttatttacaaatagttttgaatcactgaataacattCTTTCAcatgaaatatgtaaatactaTAAACTTCaacagtatatatgtgtgtatacgtatatatatatatatatatatatatatatatacacacacacacacacacacacacacactgaattattgtattatatattgctTTCTCCCACTGTTCATGAGATTGTAATTGCAAGTGATATTTGGATATTGCAAGTCAGGCCAAGTTGCATAGAACCTTAATAAATGTTCTGCAAATTAGcacataaacatttaatttgcaagcATATagtataagaaaataaatgtccttaATGTACATTTCCCTGGttatatttagcatttgtatttgagcttgtttatatacagtacacacaaatgcacacaagcacacacaaattattttatttttatttttgattcttAAGCCTGGTCTTGTTTTCAGTGGTATTAATTCAAAGGCTCCCAGCATAATTAGTCAccaatgtttgtttataaaatcaACTTACAGAGTTCAGtaacataaatgtatacatcttCCTTACCATAGAAGCTGCATACTCTTTTAAAACAACGTTTAATGTGGTAACAGCTTTCTCAATATCTATTTTAATTACTGACACAGAGCACTGAAGACTAATATTGAAACATCTGAAAGTTCTGTAACAGAGAATCTGCAACAGACCCAGCCGTTTTCCACACCTGGACAATGATGTCTTATGCTGAATACAAAATGAGCCTCAATCACACCCCATTCCATCTCTCTGCACTGACATACACCCACAACAGCAATACAGACAGCAGCGATCCACATGTGTTTGACAGATTACTACTACTTGTTAACGGGTTCTTGCCTGAAAATGTATCCGTCTGTGTGTCACTTTTGCAGCTATGCTCAGACCCTTTCTGCTTCGGGCCCTTTACGATATGGATTCATATACGTTCTTATATCCTTAAACTTGGGCAATTTCAGTGAAGACCACCGAAACACTGAAAGGAAGAATTACAGATATTCACAGGTTTATAAGGAGAATAACAGAGAGCAGTATTTCTGTGTGGAGGTCATGCAAATCAGAAGCTGTTAGACTGACAGTTCATGTGTACATAGCACAGCATGGAGACCTACTGTGCTTAATAATGGTATACATTTTTAGgttatgaaaatacaattaatattaataataatcataaataattaacaatcaCGATCACCTCAATGATTCTAATTTTGGGAAGACACTTTAAACCATGTTTTGGTTTTGGACTCAAATATATATCCAGATAGCAGCCATGAATACGTTTTAGTATGAAGActtttatatgtaatgtatatagCAACACCAGAGCCTCTATGCTCTTCACGAGGGTTTGTGGACTTTGATATGTTGAAGTAAAAAAGGTATCATGAAGTATCATGAAAGAAAAGAGGCATTTCTTCCCACTAGAGTTCAGCATCCTGGGCCTTTGGCTGAGTTCCTTGTTTATAAGGCGGGTTATTCAAATGAAGACAGGTTGCTTAAAGcgttttttcctctttcctcttctttttgGCTTAGTAATGTTGTCCTTGATATACACAAAAGGAAATCGAGAGAGGTCTTACAGAACCACCgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96276 lncRNA upstream 64560 9351591 ~ 9351870 (+) True G77135
TU96265 lncRNA upstream 207911 9205635 ~ 9208519 (+) True G77125
TU96266 lncRNA upstream 211007 9204342 ~ 9205423 (+) True G77126
TU96195 lncRNA upstream 607823 8808351 ~ 8808607 (+) True G77073
TU96169 lncRNA upstream 716313 8697678 ~ 8700117 (+) True G77049
TU96347 lncRNA downstream 9873 9429243 ~ 9431629 (+) True G77198
TU96350 lncRNA downstream 98288 9517658 ~ 9518012 (+) True G77201
TU96357 lncRNA downstream 141939 9561309 ~ 9561806 (+) True G77207
TU96390 lncRNA downstream 322419 9741789 ~ 9743100 (+) True G77233
TU96413 lncRNA downstream 455498 9874868 ~ 9940435 (+) True G77253
AMCG00010006 mRNA upstream 2297 9392881 ~ 9414133 (+) True AMCG00010006
AMCG00010007 mRNA upstream 40686 9360116 ~ 9375744 (+) True AMCG00010007
AMCG00010005 mRNA upstream 66119 9347026 ~ 9350311 (+) True AMCG00010005
AMCG00010002 mRNA upstream 212331 9178039 ~ 9204099 (+) True AMCG00010002
AMCG00010003 mRNA upstream 244782 9073241 ~ 9171648 (+) True AMCG00010003
AMCG00010012 mRNA downstream 252851 9672221 ~ 9688099 (+) True AMCG00010012
AMCG00010013 mRNA downstream 271203 9690573 ~ 9713280 (+) True AMCG00010013
AMCG00010014 mRNA downstream 494672 9914042 ~ 9919171 (+) True AMCG00010014
AMCG00010017 mRNA downstream 726183 10145553 ~ 10154362 (+) True AMCG00010017
AMCG00010020 mRNA downstream 872604 10291974 ~ 10299643 (+) True AMCG00010020
TU94664 other upstream 8052596 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 8081380 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 8088866 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 8378988 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 8544695 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 1730256 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 2281336 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 6221591 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 6638161 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 7804512 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile