RNA id: TU96390


Basic Information

Item Value
RNA id TU96390
length 1312
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G77233
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9741789 ~ 9743100 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCATGTCAGCAAATCAAGTAATTATCCACTTCCTAATTTTTGTTACCAATATGTATGAATACAGTGTTGTTCTAATTGTGGTTTATTCTTAAGGATAttgagtttttgtttaattaaatctaagTGTccttacttaaaaatatatatacaggttAGTCAATATATCCTGTTTTACTACTTCTGAGTGTCTGTATGTAGTCTTTATTCTAAAGTCCATCCATTGATGGTTttctattcttttcttttttttttttttaaagcatactCCTaaggctgtttatttttatttaaagttaaaaacgCATACAAAATCCTTTTCACTcgtcatgattttattttgggggcCATCTGTAAACCTACACTTGAAGACTAGACTCCCTACCCTCTTCTGTTTTGTCCCTTGTTAAAAAGGCATGCTATAGGCAATCTTTAATTGTGCTCCAAAAGATTTATAAGGCTAGACATGGGGATGTAATTATACAGTATGTAACCAAACCAAAGACGCATATATTGCACAATGGATGCTGGGTAGGCATCTCAGTGAGTGCGTGGCACTGGAGGCAAAGTGCACACAAATAGCCCTTCAAGGGTCGGATAGCTTGGAAATTAGGTCTCCCATTTAGtcacaataaaaaaagtgcAACATATACCTAGTGTTTCCTCGTCATTTGCATGCTGTGGTGATATGGCTTTCATCACCATCAGTTACATTTGACCAGAAGTCACATTAACCCGTCCTCCTGTAGCTTTAAGAAACAGATGCCCCCTCTTTAGGAAGAGGCTTCCAAACAGTAAGGAGGCATAAGGATCTGGTTGCGAAGTTACATTTGTAAATCAGTATAGTCCTTTTCCATTGGGTGGCTCAGGGTGTTATTGCATGTAGGATGTGGGGAGAGATGACAGTAACAGCTCTTCCACTCCAGTTTCCATGTACTGTGTACGTCGAGAAATCCAAGgcacatttataataatgaagatGCTCTGAATTCAGCTTTTCcgtatattttataaaaaatgttatgcCAGATTTGGATTAGTTTTTAATCAATACCACAATTAACTGTCTGTCAAGCTTTGTCCTAGTAGAAGTGTCAAATAAACTGCTGAAGAGTCTTGTGTATCCTTTTCGTGCCACGTTTCCCTACACTACCTTGTCACCAATTGAATGTGAGGACCCTCAGCACCACAGTCCTCAGTTAAGCCGATTATCTGCTTACCTTTTTTGCACAGCTTAGAAAACAACGATATTATAACGCGCATATTCATAAGCTTTTTAATCTGAGAGTTtaataaactgctttaaaaaaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96357 lncRNA upstream 179983 9561309 ~ 9561806 (+) True G77207
TU96350 lncRNA upstream 223777 9517658 ~ 9518012 (+) True G77201
TU96347 lncRNA upstream 310160 9429243 ~ 9431629 (+) True G77198
TU96341 lncRNA upstream 322419 9416430 ~ 9419370 (+) True G77192
TU96276 lncRNA upstream 389919 9351591 ~ 9351870 (+) True G77135
TU96413 lncRNA downstream 131768 9874868 ~ 9940435 (+) True G77253
TU96416 lncRNA downstream 179621 9922721 ~ 9926110 (+) True G77255
TU96453 lncRNA downstream 253254 9996354 ~ 9997885 (+) True G77285
TU96516 lncRNA downstream 560095 10303195 ~ 10305242 (+) False AMCG00010021
TU96526 lncRNA downstream 572246 10315346 ~ 10316098 (+) True G77346
AMCG00010013 mRNA upstream 28509 9690573 ~ 9713280 (+) True AMCG00010013
AMCG00010012 mRNA upstream 53690 9672221 ~ 9688099 (+) True AMCG00010012
AMCG00010006 mRNA upstream 327656 9392881 ~ 9414133 (+) True AMCG00010006
AMCG00010007 mRNA upstream 366045 9360116 ~ 9375744 (+) True AMCG00010007
AMCG00010005 mRNA upstream 391478 9347026 ~ 9350311 (+) True AMCG00010005
AMCG00010014 mRNA downstream 170942 9914042 ~ 9919171 (+) True AMCG00010014
AMCG00010017 mRNA downstream 402453 10145553 ~ 10154362 (+) True AMCG00010017
AMCG00010020 mRNA downstream 548874 10291974 ~ 10299643 (+) True AMCG00010020
AMCG00010021 mRNA downstream 559826 10302926 ~ 10313486 (+) True AMCG00010021
AMCG00010025 mRNA downstream 590120 10333220 ~ 10359574 (+) True AMCG00010025
TU94664 other upstream 8377955 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 8406739 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 8414225 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 8704347 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 8870054 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 1406526 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 1957606 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 5897861 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 6314431 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 7480782 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile