RNA id: TU96416


Basic Information

Item Value
RNA id TU96416
length 1379
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G77255
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9922721 ~ 9926110 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACTTCTTTATTGCATTATTAGACAGCAGAACAGCATGATAAATATTAAACGTGTTAAAACAAACGGTAAATGAAAGATAGAAAATTGTTTCACATAGAAGCCTTAATTCAACATTGTTCCACAGATTAAAAAAGTAGTACATTGCTTTATTAATTCAGATGAATGTGCTTATGCTCATTAAATACTCTTCTGAGGTTTTCCGTTCATTTACATTAACACGTCTGGTGAAATTAATtcgggttaaaaaaaaaacaaaaaaactttatttttgtggttCAAGGGTGAAAATCAGGTCGGTGCTTAAATGTGGAAAGTGCACTTGTTTTGACTACCTGTTCAGATGTAACTGATTTGTGATTCTGTCAATTTATTAAGCCTGTTGGAGtagttacatttttactttcccTTTAGTCTTTTAATTTGAAGCTTGACAAAATGTTCCTCTAAGCTATGCaacattatttacattgtttttgtgatgCCTAGCTAATGAtactgacattttcattttcattcttaaCTATATAGTTACCCTTTAACATCATATTgctatattatttatgtttgataAATCACCTCCAAACTATCACAGGAATACTGCGATGTGTAGGTGTTCTAGATCACAGCAAGTCCATCCGTATTTATAACCACACACTTTCTATTGGGACCATGGTATTCTACTCATATTTCTCAACTCCTAGAGTAAGCAACTGTTTTTAGTCTCATAGAAAACTCAAATTCTAACCTTGAAAGGtaaaagaaatggagaaaaagcAACCGGGTAAAACAATTCTCTCACTTCAATTGTATCTAGACCTCTAGTAGGTGAAATATGAACAATGAAAACACTATGACAAAGtagaaataaaaagcaaaaagttTAATGGTGACATGGAATTTAAAGGCCTgtcaaaataaagcatttcttcTGCAGTAAAGAGCAGTATCAGCCTGGGTGTAGTGGCTCAGAGGTACTGTGCAGCAGGGTGGGGCTCGGCCCATAAGGCTTTGTGGTGTGAAATGAATCTTATTTATTAGTAGATTGAGTAGGAAGCAGCTATCTACATGTAGAGCTCGGCAGCCACTCAAGCGGTCGATGATGGAGCTAGCTCATTGTCACAGTAAGATCTCAGTCGAGCTGAGAGGGTGTATCGATCTCCCGAGAAGAGAAGGAAACTATTCACATCAGCCTCTTCAAGAGCAGAGCAGCCCTGTGAACCAAAACAACATGGTATAATGCAGCATAAAGGCTTATCAGCTAAAACAGGTATGGGCTAAAAGTTAATGCATATAGAATCTAGACAAATCTATATTCCAcaggattgttttattttttttCTTTTATCTTTTGGCAATCAAGTATATCCACAGCAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96390 lncRNA upstream 179621 9741789 ~ 9743100 (+) True G77233
TU96357 lncRNA upstream 360915 9561309 ~ 9561806 (+) True G77207
TU96350 lncRNA upstream 404709 9517658 ~ 9518012 (+) True G77201
TU96347 lncRNA upstream 491092 9429243 ~ 9431629 (+) True G77198
TU96341 lncRNA upstream 503351 9416430 ~ 9419370 (+) True G77192
TU96453 lncRNA downstream 70244 9996354 ~ 9997885 (+) True G77285
TU96516 lncRNA downstream 377085 10303195 ~ 10305242 (+) False AMCG00010021
TU96526 lncRNA downstream 389236 10315346 ~ 10316098 (+) True G77346
TU96533 lncRNA downstream 404610 10330720 ~ 10332498 (+) True G77349
TU96593 lncRNA downstream 1051553 10977663 ~ 10978504 (+) True G77395
AMCG00010014 mRNA upstream 3550 9914042 ~ 9919171 (+) True AMCG00010014
AMCG00010013 mRNA upstream 209441 9690573 ~ 9713280 (+) True AMCG00010013
AMCG00010012 mRNA upstream 234622 9672221 ~ 9688099 (+) True AMCG00010012
AMCG00010006 mRNA upstream 508588 9392881 ~ 9414133 (+) True AMCG00010006
AMCG00010007 mRNA upstream 546977 9360116 ~ 9375744 (+) True AMCG00010007
AMCG00010017 mRNA downstream 219443 10145553 ~ 10154362 (+) True AMCG00010017
AMCG00010020 mRNA downstream 365864 10291974 ~ 10299643 (+) True AMCG00010020
AMCG00010021 mRNA downstream 376816 10302926 ~ 10313486 (+) True AMCG00010021
AMCG00010025 mRNA downstream 407110 10333220 ~ 10359574 (+) True AMCG00010025
AMCG00010027 mRNA downstream 485596 10411706 ~ 10412110 (+) True AMCG00010027
TU94664 other upstream 8558887 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 8587671 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 8595157 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 8885279 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 9050986 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 1223516 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 1774596 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 5714851 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 6131421 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 7297772 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile