RNA id: TU96625



Basic Information


Item Value
RNA id TU96625
length 439
RNA type TUCP
GC content 0.52
exon number 3
gene id G77423
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11149626 ~ 11155469 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTCATTCTTCACATAAGAGGTAGAACATCTAGACCAGCATCAAGGTTTTCTCCTGAAGAAACGGACAGTCCATTGAAGACAAAACATGGCGCTAAGGATTAATGGAGGCTGGTGGTTACTGCTGTTCGTCTTGTTGCCGTTTTGCATGAGCCAGGAAGAATACACGGAGGAGCAGTTTGAAAGGCCACATCTTCCAGACTGTAATCAGTGTTGTCGGGGAGACTTTGGCATGAGAATGATTCCGGGACCCCCAGGAACAGCTGGATCTCCCGGTCCATCAGGAAACCCTGGAAACAATGGCAACAATGGGGCCCCAGGCCGTGATGGAGGGAAAGGTGAAAAAGGAGACAGAGGAGACATGGGACCTCGGGGCGAGCGTGGGTCTCATGGTGTGAGGGGAGAAAAGGGCTACCCTGGAATACCGTCCGAGCTACAGGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU96593 lncRNA upstream 171122 10977663 ~ 10978504 (+) True G77395
TU96533 lncRNA upstream 817128 10330720 ~ 10332498 (+) True G77349
TU96526 lncRNA upstream 833528 10315346 ~ 10316098 (+) True G77346
TU96516 lncRNA upstream 844384 10303195 ~ 10305242 (+) False AMCG00010021
TU96453 lncRNA upstream 1151741 9996354 ~ 9997885 (+) True G77285
TU96648 lncRNA downstream 199622 11355091 ~ 11355362 (+) True G77445
TU96652 lncRNA downstream 228928 11384397 ~ 11387199 (+) True AMCG00010041
TU96744 lncRNA downstream 429485 11584954 ~ 11586100 (+) True G77517
TU96742 lncRNA downstream 435749 11591218 ~ 11639790 (+) True G77515
TU96772 lncRNA downstream 586179 11741648 ~ 11743415 (+) True G77543
AMCG00010034 mRNA upstream 63705 11084680 ~ 11085921 (+) True AMCG00010034
AMCG00010028 mRNA upstream 239684 10894209 ~ 10909942 (+) True AMCG00010028
AMCG00010024 mRNA upstream 350947 10793932 ~ 10798679 (+) True AMCG00010024
AMCG00010026 mRNA upstream 395078 10753792 ~ 10754548 (+) True AMCG00010026
AMCG00010027 mRNA upstream 737516 10411706 ~ 10412110 (+) True AMCG00010027
AMCG00010037 mRNA downstream 21623 11177092 ~ 11181005 (+) True AMCG00010037
AMCG00010036 mRNA downstream 60242 11215711 ~ 11244369 (+) True AMCG00010036
AMCG00010041 mRNA downstream 134434 11289903 ~ 11389245 (+) False AMCG00010041
AMCG00010043 mRNA downstream 273090 11428559 ~ 11439004 (+) True AMCG00010043
AMCG00010048 mRNA downstream 285170 11440639 ~ 11457795 (+) True AMCG00010048
TU94664 other upstream 9785792 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 9814576 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 9822062 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 10112184 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 10277891 867680 ~ 871735 (+) False AMCG00009821
TU96770 other downstream 545237 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 4485492 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 4902062 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 6068413 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 6090168 17245637 ~ 17246988 (+) False AMCG00010160

Expression Profile