RNA id: TU96648



Basic Information


Item Value
RNA id TU96648
length 272
lncRNA type intronic
GC content 0.43
exon number 1
gene id G77445
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11355091 ~ 11355362 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aatccagaaaaacgcatttcaaaaaagttataacttgatttgcatgttaaggggggaaataagtatttgactccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgtttcttgtagttggccaccaggtttgcacacatctcaggagggattttgtcccactcctctttgcagatcctctccaagtcattaaggtttcgaggctgacgtttggaaactcgaaccttcagctccctccacagattttctat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU96593 lncRNA upstream 376587 10977663 ~ 10978504 (+) True G77395
TU96533 lncRNA upstream 1022593 10330720 ~ 10332498 (+) True G77349
TU96526 lncRNA upstream 1038993 10315346 ~ 10316098 (+) True G77346
TU96516 lncRNA upstream 1049849 10303195 ~ 10305242 (+) False AMCG00010021
TU96453 lncRNA upstream 1357206 9996354 ~ 9997885 (+) True G77285
TU96652 lncRNA downstream 29035 11384397 ~ 11387199 (+) True AMCG00010041
TU96744 lncRNA downstream 229592 11584954 ~ 11586100 (+) True G77517
TU96742 lncRNA downstream 235856 11591218 ~ 11639790 (+) True G77515
TU96772 lncRNA downstream 386286 11741648 ~ 11743415 (+) True G77543
TU96872 lncRNA downstream 669459 12024821 ~ 12025152 (+) True G77621
AMCG00010036 mRNA upstream 110722 11215711 ~ 11244369 (+) True AMCG00010036
AMCG00010037 mRNA upstream 174086 11177092 ~ 11181005 (+) True AMCG00010037
AMCG00010034 mRNA upstream 269170 11084680 ~ 11085921 (+) True AMCG00010034
AMCG00010028 mRNA upstream 445149 10894209 ~ 10909942 (+) True AMCG00010028
AMCG00010024 mRNA upstream 556412 10793932 ~ 10798679 (+) True AMCG00010024
AMCG00010043 mRNA downstream 73197 11428559 ~ 11439004 (+) True AMCG00010043
AMCG00010048 mRNA downstream 85277 11440639 ~ 11457795 (+) True AMCG00010048
AMCG00010049 mRNA downstream 102751 11458113 ~ 11465569 (+) True AMCG00010049
AMCG00010050 mRNA downstream 111563 11466925 ~ 11469784 (+) True AMCG00010050
AMCG00010047 mRNA downstream 115790 11471152 ~ 11473944 (+) True AMCG00010047
TU96625 other upstream 199622 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 9991257 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 10020041 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 10027527 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 10317649 1037206 ~ 1037442 (+) True G75745
TU96770 other downstream 345344 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 4285599 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 4702169 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 5868520 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 5890275 17245637 ~ 17246988 (+) False AMCG00010160

Expression Profile