RNA id: TU96772


Basic Information

Item Value
RNA id TU96772
length 1768
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G77543
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11741648 ~ 11743415 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTGAATGGTGCCaaagtggaaaatgtgtttctatatataaaaattgtTTGCATGATGCTGGGAACATGACTTCAAGGGTGTGTAACAGTTGAAACTTGAGTGaatacaaagcaaacaaacaaatcactaaCTTTACCTTTTTTTTAGACAAGTATAtctcaatgttaaaatgttagtGCATGTCATGTCTAATATCGGGCTACCCATTACGCCTCTTAACAGTATAATATGAAAAGATTTGGGAAGAGTGGTCTTAACTTTTAAGAAGTTATTGCCCTTAATATTTGTGAACTGCTGTCTGTAATGCATTACAGAATATGTTGTGAAGAGCCACAGCTCAGAAAGTCCAGTCTGAGCGATACTGAAATTGTGCCTACCAACAGACAGTTTAAGGCTAATCAATTACGTCTTTTGGGAATGAGAAATTAGCTCTGTGTCAAAGAGCAGAATAGGAATGCTTAAAAAAAGCAGTAGTAAAATGAGTATTGATAGGTCTTGATAGGACTAACTTTGACATTTGCTTTCTCACAACTCTGGTGTTTTAGAAGGAATCCATAATCGTGCTCACACAAGGTTAGCTGCCTCATTTTGACATATTCCTTTTGAAATCAACAACATAAAATTATGAGAAGgaaacttgattttttttcccatgtaaaaaaagaacactgtgtatgggtttaattttgtatcttATCACACAGGTATTAAAATATCAAGGGCTTTGAACTGTTAATTCTCCCAGTATGTGGTTTCAAAAGTCCAGAAGAAAACTCTAGCAAGTAATGCAATTTCAGGATCCTATTGATGATTTGGTTATCCTTAGTGTTCGATGGAGCAAAAACTGCTGTAGCTCAAAAAGGAGAAAACTTAGAAATGTGTGAATGAAGGGACACTCTGGCAGTTGTACAGAAgatatatttaaagtgtttgcCCTGTTGGACCTACCACAAGACCAATTCAAAGTCATGTCAAGCTCTCCCTAGTTTAGATCCACATATACAATTCCACGTGATAGAAATAGCAAGGCAACGCCACTTCAGTTTAGGTGTTTGATCACAATACGCTGTACCATTTGTACGTTTAAGACAGTGTTAGAAACTAGAGATGTGGTTAAGATCTTGATTTTCCACAGGCTGAACACCTGCAGCGTAGTAAAGATGCCAACCTCACCACAAACACGATTCTGGTAGAAGAGATCCCTGCCAGTTATGCGTTAGAGCTGTACCTCTGTGGCTTAAAGCATAGGAATAAGAGGGAGACAGCCTCAGGCAAATCCCatatatatacaagtaaaaTCCTAGCTGAACAGTAGCCAAAAACCTCATTATTTTCAGCTAATTTTAATGAATGGGGACATCGGctttaaaacaagaaactgaGCAAAAACAGGAAGGAAACTGATTGGGgagtaaacaaatcaaattgcTTTGACTTTTAAATCCTCCTCTCGTGCGTAAAAAACCACACACCCGAGGGCAACATTAATGTGGCGTGTGATGTCCTCCCGTCAGCCAGCGCTGTTCttatattgtatgtttgtattggTATGTTTTGATCTTGTGTCTGTCCTGAGTGTTGCTATGTTCTAGTGAGTGAAGTGTGTTGAGCTTTGGACAATTATTGCGTAAtaagctataaaaaaaaaaaaaaaaaaaaaaaaaaaaggtaaagttGTGATTTCTGACTGAGCAGCTGAGTAACAGAAGAATATTTTTCCCACAAGCGATGTGTATCACCTCCCGCAAACCTAATGTCTCACTCATT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96742 lncRNA upstream 101858 11591218 ~ 11639790 (+) True G77515
TU96744 lncRNA upstream 155548 11584954 ~ 11586100 (+) True G77517
TU96652 lncRNA upstream 354449 11384397 ~ 11387199 (+) True AMCG00010041
TU96648 lncRNA upstream 386286 11355091 ~ 11355362 (+) True G77445
TU96593 lncRNA upstream 763144 10977663 ~ 10978504 (+) True G77395
TU96872 lncRNA downstream 281406 12024821 ~ 12025152 (+) True G77621
TU96927 lncRNA downstream 405516 12148931 ~ 12152321 (+) True G77661
TU96937 lncRNA downstream 426683 12170098 ~ 12171321 (+) True G77669
TU96938 lncRNA downstream 433813 12177228 ~ 12177489 (+) True G77670
TU96941 lncRNA downstream 465598 12209013 ~ 12214521 (+) True G77673
AMCG00010052 mRNA upstream 1137 11730480 ~ 11740511 (+) True AMCG00010052
AMCG00010046 mRNA upstream 105479 11620150 ~ 11636169 (+) True AMCG00010046
AMCG00010045 mRNA upstream 168447 11520239 ~ 11573201 (+) True AMCG00010045
AMCG00010044 mRNA upstream 225083 11493686 ~ 11516565 (+) True AMCG00010044
AMCG00010047 mRNA upstream 267704 11471152 ~ 11473944 (+) True AMCG00010047
AMCG00010054 mRNA downstream 102989 11846404 ~ 11866799 (+) True AMCG00010054
AMCG00010057 mRNA downstream 128416 11871831 ~ 11907105 (+) True AMCG00010057
AMCG00010059 mRNA downstream 316360 12059775 ~ 12085063 (+) True AMCG00010059
AMCG00010063 mRNA downstream 342431 12085846 ~ 12094799 (+) True AMCG00010063
AMCG00010061 mRNA downstream 364146 12107561 ~ 12116515 (+) True AMCG00010061
TU96770 other upstream 40567 11700706 ~ 11701081 (+) True G77541
TU96625 other upstream 586179 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 10377814 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 10406598 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 10414084 1322618 ~ 1327564 (+) False AMCG00009844
TU97434 other downstream 3897546 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 4314116 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 5480467 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 5502222 17245637 ~ 17246988 (+) False AMCG00010160
TU97800 other downstream 5530972 17274387 ~ 17277998 (+) True G78396

Expression Profile