RNA id: TU96872


Basic Information

Item Value
RNA id TU96872
length 332
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G77621
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 12024821 ~ 12025152 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgggacctgttggatcagagggtgagggctagggccattccccccagaaatgtcatGGAACTTGGAAGTGCCTTgctggaagagtggggtaacatctcacagcaagaactggcaaatctggtgcagtccatgaggaggagatggactgcaggacttaatgcagctggtggccagaccagatactgactgtgaCTTTTGATattgaccccccctttgttcagggatacattattcaatttctagTCACATGAtcatttgttcagtttatgtcttagttgttgaatctttttatgttcatacaaatatttacacgttaagtttgctgaaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96772 lncRNA upstream 281406 11741648 ~ 11743415 (+) True G77543
TU96742 lncRNA upstream 385031 11591218 ~ 11639790 (+) True G77515
TU96744 lncRNA upstream 438721 11584954 ~ 11586100 (+) True G77517
TU96652 lncRNA upstream 637622 11384397 ~ 11387199 (+) True AMCG00010041
TU96648 lncRNA upstream 669459 11355091 ~ 11355362 (+) True G77445
TU96927 lncRNA downstream 123779 12148931 ~ 12152321 (+) True G77661
TU96937 lncRNA downstream 144946 12170098 ~ 12171321 (+) True G77669
TU96938 lncRNA downstream 152076 12177228 ~ 12177489 (+) True G77670
TU96941 lncRNA downstream 183861 12209013 ~ 12214521 (+) True G77673
TU97076 lncRNA downstream 1374756 13399908 ~ 13400196 (+) True G77796
AMCG00010057 mRNA upstream 117716 11871831 ~ 11907105 (+) True AMCG00010057
AMCG00010054 mRNA upstream 158022 11846404 ~ 11866799 (+) True AMCG00010054
AMCG00010052 mRNA upstream 284310 11730480 ~ 11740511 (+) True AMCG00010052
AMCG00010046 mRNA upstream 388652 11620150 ~ 11636169 (+) True AMCG00010046
AMCG00010045 mRNA upstream 451620 11520239 ~ 11573201 (+) True AMCG00010045
AMCG00010059 mRNA downstream 34623 12059775 ~ 12085063 (+) True AMCG00010059
AMCG00010063 mRNA downstream 60694 12085846 ~ 12094799 (+) True AMCG00010063
AMCG00010061 mRNA downstream 82409 12107561 ~ 12116515 (+) True AMCG00010061
AMCG00010062 mRNA downstream 111971 12137123 ~ 12140030 (+) True AMCG00010062
AMCG00010068 mRNA downstream 322838 12347990 ~ 12359546 (+) True AMCG00010068
TU96770 other upstream 323740 11700706 ~ 11701081 (+) True G77541
TU96625 other upstream 869352 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 10660987 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 10689771 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 10697257 1322618 ~ 1327564 (+) False AMCG00009844
TU97434 other downstream 3615809 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 4032379 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 5198730 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 5220485 17245637 ~ 17246988 (+) False AMCG00010160
TU97800 other downstream 5249235 17274387 ~ 17277998 (+) True G78396

Expression Profile