RNA id: TU96941


Basic Information

Item Value
RNA id TU96941
length 5428
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G77673
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 12209013 ~ 12214521 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tatccagtttgtttttaaaagacaatttcAATAAAGACATTATTTCATAGTTCACGTTTGTTCAAAAggtaaatctattttaaatcaGCATAGCATAAATCTGTTAGactatactttttattttttgatatcCCAGGCATGACAGTATGTTCCCCTACCTTTGTaaacagtatatacagcatATCCAATTACTattcacaaaaatgtttttatatgtgatgtttttattattatttatttatgtatttatttatttattgatgtggaTAACATAAGTAATACTCAAAAGAAGTTCATGGACAGTGAGACTGGTTTGAGCTATGCCATTTTCAACTGTAACTTCCCAGTGGctgggaaataaacaaaaatatagtttttagcTTTGTAGATGCAATTGTATCCAATGTGCGCCCCAACAATTTACCAGCAGTGCCTCAAAAACGGCCTGCATCTTGACAAACTCACTGTACTTATGATTATCTGTGAACCCAGACTGTTACCATCTACTAGAAATTACCCACCGGCAATCTTACAAATGATGAGAATGCCCGGGTACACAAAgagtacaaaaacaattattactAACTGGGACCAATAGTGATAGCTTGTAAGCcttcaaaaacaacattttaattgctaCAAATCATGGTAGGTAGGTTACATATCCTGTGCTAGCTAACCATGCACAGAGGACCACTGGCCTGCCACTTACAATGATCATTTCAGCTAGCTGCATACATATACGTATAGACTCCTATAGATACTTATATAAGTTATTTGAATTTggtataaacattattttacatcagTGTAGGTCTTAGTATTTCGGTATACAACTCAAAGTAGaacaaaaaaaggatttcaCATCCGATGAGCTGTTAAattcgtaaaaaaaaaaaaactacaaatattagaataataaaataaaaaggaattatGTCCAACGGccaaacaagcaaacaatgtTGATGAGAGGTGCGTGCCCAGCTACAATACATTGGCATGATTGGTGTAAAGACCTGGTTTGTCAACATGCAGCAAAATCGCAGAACTTGGGTGCTCTTACATGGACCCACTCAGGAGATACACAACAGACAAGCAGCATTGTGAAGTCATTAAAAATCAAGATATTTAGGCCAATAAAGGAGACGGCTCACCGAATAAAGACTGCATTCTTTTCTTCACATCAAGTGctgtacatgtttaaaatatcaaCAACATGCATGAAACTGGTATTTGATCATCATAAATGAGACTGAAgcaactgaaaaacaatcttAAAGGTGATCACCACTATATGGCATACATTTAGTCCCTCCCAAATACATGGGTAAATTCAACAGACAAGCTATCCTGAAATTCTGTCAGAAACCTCAAAACATCCATCATGGAACTCTTACAAAGCTGATctgaagaataataaaataatccacaaAATCAGCTATTGTTTGTCTCATTGTAAATGTCccataataaaaaacagcagctaTGCCAAGCTGATGGggaaacaaatgaaacacaaatggaaatacataaatggaaaatacatcAAGTAAATTAATCTCAAAAGCATTCAAACACACATTAAATGAATCATTTGTCATGTAGTCTCTGTGGGTTAAagttttttgattttgttgttgtcccccccccaccctgaatACATAAGTACAGACAGATGCATTTGTCAGCTCAGAAGATACTTATTCCCTTGCGTTTCCTTaacaaatcatgtatttataaGAGACTAGTCTACATCACGATTATTCTTGTAAAGAGATGTTTTATAATAAGCCTTCTGAGGATATGCTAAAAACATCCAATATTCCATTGTTGGAGTGACTGAGGTCTTGAGGGTTCTGACTGAATGGCAagtgatatttgtatttactttaattacacCCCGATGACAATGAGAGATATCTTGAGTTGCATGTATGCTGCAAAAATTAGGgtaacaaacttattttttatatctcaGAACTGTACTGATTTAAGCAATGGTTCTCTTTACATATTGGCCAAGGTGCAGTTTTGCAGTCTCAACAGGGGCACTTACAGGAAGGGATTCAAAGATTTATGTGGCTATTACATTGACATGTGGCTTCCATTGTTTTGAAGTTTACAGTGTATATCTATAAAGAGAAAACACAGGCTCAATCTTTTTAGTGCGGCAATTTGTACACTtgagcaaaaagctttgaaagtcaGCTTATTAGTAGGTTACCTATTGGCAATGTAGGAATGTACACTTCACTGTAGTGGGACTTTATTATAAAGCAAACTGGATGTATATTGAGGCCTTTagattgaaaaatgaaaaacaggcaCAAAAACAAGAGTATGGTATGGAGACCCATTTAAGTTTGGCTGGCTGGGTGATGAGAACCTCACAGTAAGCACTTCAACTGAGGaaacaataagcacacatcAAAAAACACCATTTGGAAACAGGTGGTGAAAACCCTTCTtccaaaaacaatcaaacaaaactaccccctcaccccccaaaaaaacccCACCCAAAACAtagacaaataaagaaacaaatgctaataaaagtgtaatttacAATTCAAATCATCAATATCCCacaaaaaggattttaaaaaaagagaagcaaCGACAGcgaaaaaacaagaacaacctGAACTGTAACCTGTAGGCAAAAATAAGACACTGGTAATTCCTGTTCTTTTTGAAGCCTACTGCCTACAAGGTGGAACAAAGATAATCTCACTTCGTCAACACGTCTCAATTTTAGATGAAGTGAGACAGCCGTGAACATAACCTTCCCTGATGATAAGCCTTAGGGGAAATGGATTTAATCATTagagaaaaacataaacagccactccccccccaccccccatcagATGCCTTCAGCTTGTCTTGCCCTTAATCTCTGAGAACTTCCCCAGTCAGTCGGCCCTCTGGAAATCATGTTAAGCACACAGTCAAATTAAGTATGTGCTGATTACTAGcagaaacaaatcacatttttaagtCCCACATGATGTTTTCAGTACCTAAAGTAAAAAGTTCACTGCCTGGATCTCTGATAGGTGTTCATACTTCACAAGTGGTAATGGACTGCACTTAACTCCCGCCTTCTCCCCTTCACTTCAATGCCCTGTCCCTTTCAAATAGCATATTTTCTACTGTAAAGGAGGAGGACTCTTTTACTTCAGCAGGCTCATTGTGTGCCTGTAGACATTGAGGAATAAGCATTAGTTCTCTTAAGCCACACTGAGATGGTTCAATAATGGAGGATGCTGCAGGCTATCATTCTGCATCTTTTATCTCCTTTCTTAATTTAGCCAAACTCAGCAAAACTACCCTGCTGAGTATCTCTTTGTGTACCATCAGTGTACTAAAAGTGACTTCAGAAAATCCTCTCGTCCTGACGCCAATATTCAAAGCTTTGCATTTGACAAAGCACAATTTTCCAAGACCTGCTTCACTAAAGAGGAAAGAGCTGCCCACACAATGGACAGTGCTAGCACAGCGATCTACGACAGTTAAACCTACTCAACAACAACCCAGAGGATGTATGCTTTCAGCATCACACACCACAGCTCTTTAACTTTGTGAACGTCTTTATTTTCTCCCTCATAGCTTTTCAGTGCTCGGCTTGGCTACAATGGATAGTGTCACTTGACTATTTTTATAAggattaattatgttattgtgTCCTGTTATTTCAAGACATCATGGCTTTAAAATAAGACACTGAGTTATATCTTTACCTACACCTTGTGTTTGGCAGAAGATAAGTTACCTTTACCTTTATTGATACCTCCTGGATTTTCAGATAAAggtacaaaacatttatttcattcatcaaAGCATGTTACCAAGTTATTAGGACAATATAAGTAGGTTTAAACCAactccatttctttttaataataataaaataaaaaaatggattaGACTTTGCCTCTGAGGAAATCTCTCCCGCAGAGTATTGCAGATTCAAAATGTACCTCTTGTAAATTCTTACTAAAGGcaagtgaaatataaaatatagaattCAATCCTACCTAAGAGAACTGCAGTAAATCAGAGTTTATGTGCTAGATCATCTGGCATTTACAGTCTATGGTACATGATATGAGTTTGGGATActgcactttttaaaagtttaatcaatattgttattgcaaaacacagacatcacTTATCCATAATCCTTCAAGTTTACTAGTGTGACACACACAAGTTCAAGCCACAGTGATGAAAAAAGATTGATTTGGCACAAAGATCAAATATCAACATAAATTATTTAACTGGGCAGTCTTAAATGTACTAACATACTGCCTGCCATACTTTGTACTATGTCAGTTTCCCCATAACCCTTTCAGAAGCTCTCTTACAATGTGGATATAAAGGCCCATCTTTGAGCTGTCAATGTattatgaagtaaaaaaaataaaaaataaaaaataaccaatAGAATTAAGCCATGCTTTGATCCCCTAAAACCACTTTGAAAACCATATTCAGATGGAGACTGAggaatgtttatttctgtaggCATGTGTAACACCTGAGGAAAGGGATAGAAAATccttaaaatgtaaccaaatctctgaaacaaaatgcaagttGGTTAAAGTGTTATTATAAATCTAGATATAAAGATAGGGAAGCCCACATATTGCACAAACTGTTCTCTGATATAGCTAACAGTTTAATCAGTAGAGCTCCTGTTAGTGGCAGATACTTTGTTCCGAGATTATTAACTGAACTGAAAGAGCTAAAGTACACCAGCTCATTACTCACAACTATATCCTATACTTAAAGGTTAAGGTATTTCTGCCATTATGTGTAATGTGCGATATTTTTTGTAGGTCATTTTCTTTCGATGCGCAGTTTCGAAATggcaaaactatttttaaatgatttttctAGCTCTCACGGCTTTAGAGGGCTATATCACtgtaaacatgttactgtggaCCATTTCATCTCTTCTTCTGATAATATTACTATAGCCATGCAGCTTGACATATAAAAGCAGTGAGGGGAGGTTGCAGAGTTGTCAGTGCTGTTCTGTCAACAGCGACGAATCTGAAGGAAGACCGTTCTTCAGTCGTGTCAGAGCTGGaagtgagttttgttttgtttgcgtctttttttcttcttctctttttcgGATAAGCTTGATACTGTAACCGTCAGAAATGGCACCTGGGAACGCAGCCTAAGCCGAGTCCCACAATGGGGCCTCCAGTGCGAACTCTCAGCCTACTGGGTCTCCCGAGCCCTCAGACCCGAGTGAGGAAGTCCAGACTGAGGCTGGCAGGAATGTGCAGAGTCTCTAGGCTGAGATTAGAGGGAGTGTAGGGGAAGAGCACTGGGAAGGTGTGCTTGGCGTCCACTAGAAGCTGCTGAGAATCAGTATTGTCTTGAAGTAGAccct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96938 lncRNA upstream 31524 12177228 ~ 12177489 (+) True G77670
TU96937 lncRNA upstream 37692 12170098 ~ 12171321 (+) True G77669
TU96927 lncRNA upstream 56692 12148931 ~ 12152321 (+) True G77661
TU96872 lncRNA upstream 183861 12024821 ~ 12025152 (+) True G77621
TU96772 lncRNA upstream 465598 11741648 ~ 11743415 (+) True G77543
TU97076 lncRNA downstream 1185387 13399908 ~ 13400196 (+) True G77796
TU97279 lncRNA downstream 2745751 14960272 ~ 14961505 (+) True G77958
TU97287 lncRNA downstream 2777398 14991919 ~ 15029371 (+) False AMCG00010101
TU97274 lncRNA downstream 2789513 15004034 ~ 15047855 (+) True G77954
TU97337 lncRNA downstream 2990153 15204674 ~ 15221655 (+) True G78007
AMCG00010062 mRNA upstream 68983 12137123 ~ 12140030 (+) True AMCG00010062
AMCG00010061 mRNA upstream 92498 12107561 ~ 12116515 (+) True AMCG00010061
AMCG00010063 mRNA upstream 114214 12085846 ~ 12094799 (+) True AMCG00010063
AMCG00010059 mRNA upstream 123950 12059775 ~ 12085063 (+) True AMCG00010059
AMCG00010057 mRNA upstream 301908 11871831 ~ 11907105 (+) True AMCG00010057
AMCG00010068 mRNA downstream 133469 12347990 ~ 12359546 (+) True AMCG00010068
AMCG00010067 mRNA downstream 150638 12365159 ~ 12370529 (+) True AMCG00010067
AMCG00010071 mRNA downstream 164917 12379438 ~ 12416428 (+) True AMCG00010071
AMCG00010073 mRNA downstream 209625 12424146 ~ 12436820 (+) True AMCG00010073
AMCG00010074 mRNA downstream 223198 12437719 ~ 12440223 (+) True AMCG00010074
TU96770 other upstream 507932 11700706 ~ 11701081 (+) True G77541
TU96625 other upstream 1053544 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 10845179 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 10873963 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 10881449 1322618 ~ 1327564 (+) False AMCG00009844
TU97434 other downstream 3426440 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 3843010 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 5009361 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 5031116 17245637 ~ 17246988 (+) False AMCG00010160
TU97800 other downstream 5059866 17274387 ~ 17277998 (+) True G78396

Expression Profile