RNA id: TU97274


Basic Information

Item Value
RNA id TU97274
length 1969
lncRNA type sense_over
GC content 0.35
exon number 2
gene id G77954
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 15004034 ~ 15047855 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGCagttgagattttttttatattagcCAATAAGATGGTTTTGTCTCAGGTATGAATGAATAGTTCCAGAAGCTTGATaccaaaatgtacttttatatcTCACTTGTAGGATTTTGTACTCCACTCTAAAACCattatgcaatacattttactaGTACTTTAGAACCATCAATCTGACAAGATTAATCACTAGCAAGAAAAGACACCAACCTGtgcaaaacatgatttatttgcatgaatcatgaaaaatagaaaatcaaaGGCACCATCTGTGTGACACTGTACTATTAAAATTCTGTAGACCTTATATATATCTTCTAGAGAACAACAATAGTTACAGCTTTCTCCAAAACCATCAACActggaagaaatacaaatgtaggaCCTTCTCAAAGGATCTGAAACATGGCTACACTTGGTGCAAACAGTTGGAGAGTCTCAAACACATTCTGCGtagagaaaagaaagattaCAGTAGATCCAGGTTAaccaaaaaaaactacttttagTGTACCGTGTAGTCATCTCCCATTTTTCCAGTAAGCAATTGTAATTAGTTGATTATTCTCCTACAGAAATTAAGCAGCATGCAAACCAGCAGTGAACTGAAATAGTCTGAGCTCTATTTGTGCATGATTTTCCAAAGAAAAGacataaaattaagaaaagtaaCCCATTGATCCCCAAATTACTTTTCCTCCTCTAGTTACTAGGATACATAGTAAATGTCCCCATGCAAAAGCACTCGCATTTATCTGTGGTAGGCTAGAGTTAATGGTGCCAAACCTATTTCTGTCTTTACTGTTGTTACAATACACAAAATGAGAAGTCAAAATTTACCGCTGCAGCAAGCTTTTTTGCATTACTGTATGTTTGCCATTTTAGTGTGATGTATAGGTAAGCTACGTACAATTAAGGAAGATCTGGAATTTCATCACAAACAGCCTTTGctaaattatttcattaaaattttgcatattttataacATTCATGAATCAATACAAATGACATTCTTTTGGGTGTATGTGCGACTCCTACTCTAGGATTCACCTCAGCACTGCTGCACTGACATCAAATGCACACAGactgttaaaaaacagaaaataggtCCCATATGTGTGCAACCCTACAGAAACCCTGTACAAATTGTAAGTTATGATGTAGTACATGCAgcaataagaatacaaataccGGTATCAGGTATAACCAGTTGCCCCTTCAGCtctgaaataatgcatttgctGCCAACATGAGAAcctgatcatatatatatatatatatatatatatcatatttggtcctttattaaaacaaatacataaaacatacaaacataaagTTGCTTTGACCTTTTGATTGAAACACTCGTTATTTACAAACACCGCTAGATTAAACAGCCTCACTGACATATTAACATTTGACAGTCAATTAATGTGCATAGCTCCATGCTTTTAACCTTGTACACGTATAAACAGTGGTCAATATGTCAACCCCATACATAGAAAACATAGAAAATAGAACACTTTAGCACTGTATACCACCAGCTTTACAGTGACAacccacagaaaaaaatatataattaatttctaaaagTGAGACACTTAggtgttttctatttttttagtttattttaagccACAATGCCCACAGAACATTAAAATAGTCCTCCTGACCAAGTGATCATTCCAGTGGGAGGGAATCACTAAAATGTCAGCCAGTCAAAAGCACAAGTACTCCAGTTACAGCTGATGGAAGACTTCAACATACACTGTACAGACTTGGACCACAGCCGAGCACACCGGGACTTGGCACACCACATGgaatgttttgttcattttttcttgGGTTTTTAGAAGGTTTACAAGCTTAACTCTGATAACCCtcctgtgaaagaaagaaagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggggaaaaacatgTTATTCC

Function

GO:

id name namespace
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0044344 cellular response to fibroblast growth factor stimulus biological_process
GO:0071774 response to fibroblast growth factor biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97279 lncRNA upstream 42529 14960272 ~ 14961505 (+) True G77958
TU97076 lncRNA upstream 1603838 13399908 ~ 13400196 (+) True G77796
TU96941 lncRNA upstream 2789513 12209013 ~ 12214521 (+) True G77673
TU96938 lncRNA upstream 2826545 12177228 ~ 12177489 (+) True G77670
TU96937 lncRNA upstream 2832713 12170098 ~ 12171321 (+) True G77669
TU97337 lncRNA downstream 156819 15204674 ~ 15221655 (+) True G78007
TU97343 lncRNA downstream 181038 15228893 ~ 15232199 (+) True G78012
TU97364 lncRNA downstream 259195 15307050 ~ 15308646 (+) True G78032
TU97394 lncRNA downstream 476775 15524630 ~ 15534087 (+) False AMCG00010116
TU97443 lncRNA downstream 606133 15653988 ~ 15654643 (+) True G78100
AMCG00010102 mRNA upstream 3278 14978146 ~ 15000756 (+) True AMCG00010102
AMCG00010099 mRNA upstream 263065 14700320 ~ 14740969 (+) True AMCG00010099
AMCG00010098 mRNA upstream 332632 14656485 ~ 14671402 (+) True AMCG00010098
AMCG00010096 mRNA upstream 489941 14489911 ~ 14514093 (+) True AMCG00010096
AMCG00010094 mRNA upstream 556483 14440450 ~ 14447551 (+) True AMCG00010094
AMCG00010109 mRNA downstream 37247 15085102 ~ 15099005 (+) True AMCG00010109
AMCG00010110 mRNA downstream 164150 15212005 ~ 15217546 (+) True AMCG00010110
AMCG00010111 mRNA downstream 392136 15439991 ~ 15442927 (+) True AMCG00010111
AMCG00010115 mRNA downstream 444768 15492623 ~ 15514695 (+) True AMCG00010115
AMCG00010116 mRNA downstream 476591 15524446 ~ 15534046 (+) True AMCG00010116
TU96770 other upstream 3302953 11700706 ~ 11701081 (+) True G77541
TU96625 other upstream 3848565 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 13640200 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 13668984 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 13676470 1322618 ~ 1327564 (+) False AMCG00009844
TU97434 other downstream 593106 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 1009676 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 2176027 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 2197782 17245637 ~ 17246988 (+) False AMCG00010160
TU97800 other downstream 2226532 17274387 ~ 17277998 (+) True G78396

Expression Profile