RNA id: TU97476


Basic Information

Item Value
RNA id TU97476
length 3176
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G78127
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 15720179 ~ 15723894 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCAGTACGTTATCGCTTTATTATAAGGCATAACTGAATGTCATACAATTTTTCTGAATACAAATTGTTATACAGATGTATGAAGTAGTGTCAATAAATCTATAAATTCCAGTTTATTGCAAAGACTAGATGGTAAAATTCACTGTTACACAACATCCAGGAAAAAGGGGTAGTGCACAgaagatatatacatacagaagaACAAGCTTATTTTGATTTCCAGTCAGAGTTTTAATAACTCTATAATTGATTTATAACAAGTGGGCATTGATCTATGAATCCCATTCAAAAGGAATTTAAGGCAGTCATTAAACTGTCTATTAGATTGGTTTGTGCTTTAAGTTAAAGCCATCGAGAATCATGTCGGAACCTAAATATCAAAACCATGAGAAATATAGGCTGTGCAGAAAACTATTCTTAAGGTGAAGCGAAGAATAACCAGTGATGCAGTGCCAATAGTTTGAGTCTTATTGAATCACATACAATCTATGCCATCACACAGATCAGAATACATTGAGCAAAACCACCTAAAAGGAGTCTTGAAAAGGTTTTCCTGGAACAAAATTAGGTTGCCAGCATCACCCAATTATGGCTGCATTTATCTGTCCAAAGTTAATGTGCATACATAAAGTGTACACTCCTGAGAGATGATTTGACAAGGAAAGCATTTAAAGCCATTAAGCTTAAATCAGTAGGATTTCATCAAATTATACCTacacataaattaatatataatgccTAACAAAACTGAAGTGTTGATAAACTTGTGGTATCAGTATTTCTAAAGTGACTAAATGCCTAGGTGACAAAGTTGCCTGTATCACTTGgttgaattaaattgtgtttgtgcaatgaaggcacagatcatttgaaaagaaagacatGCACATTAGGTACTAGACCCTCAGGAAAGAGAAGGATTGAATGCAGTTAAAGCTCAAAAGTGACTTTTATTCCTGAAACATTTGGCTGGATTTTAGATGCATACAAAAAGGACAACAGCACATTGGGGCACTAGCTCAGCATCGGATAACTTGCATTCATCATCGTGGTCTGAAAGGGTGCCATTGACCCTCTTCGATATCAAGCACATGCATACGTTTGTAAGCAAACATTCCTTGTAAGCACCAATTTAAGGGCAGCACAATCGTGACCGTGTACAGGCTTCAAAACCAACGCAGATAGcttaattttcaaattattgtgacatgcatttaaaaaataaagaacacattatgacaaaaaacaaagctcTTCCAAATCCATAAACTACAATTCATTAATCTTGTGTATGTGATTCAGTAAGCGTGGAACGGAGTGACATGAATTCAGTGGAACACGAGCTATTGAGATGAAAGATCTGGAGGATGCTGTAGGAACAGGACATCAAAACTCCTGGACATGATGTGCTTAACAAGTAAACATGGGACTTCCCAATGTTCGGAGGCCTTCCTGAGGGGAACCAAAAAAACAAGGATACTAACGAAGATGGCAAGGCAAGGTGATGTTCATGCAAATGGGTTGCCTAAAGGCGCTCCAAACAGATCGGACGTAGCCGGCTGCTGGGCTGGGCTCTGAGAGGGGGAGGTGCTCCAAAAGGGTCGGACCCAAAAGCATCATCAAAGATGTTCTGTGGAGGATTGGCAACAGGAGGGGTCTGGCGGGGGGCAGGTTTTGGTGGCTCTGGGGGGGGAAAAGATAAAAATGATTATGGGAGGAGATTCTCTATGCTactgcacattttattataagCAGCTATGGAGTGAATGATCACTAACAGGCAGGGTAGACGGATCTTCAATGAACCCAGATAGAATTCTAAGTGACTGAAGGAATACAGGGTCTGATCCCCTCCAGTACCAAGCCATCTTCTCCGGTATACTgcttattttaaagcatgtttaAGAGTGTGGTGGTGTTGACAAACATGCTGACCAAATGTACTTGATGCATGCATCTCCTGGGCTGTACAGCACTTACCATTGTGCACTTTATTTAGCTATGCTTTCCTATGCTCCCTTGCAAGGGCTGAATAAGGGAGTCTGCCAGTAAATATGTTTAGTGCACACACACTAAAAAGATGATTAGGTCATGCTATGGAGAGTTAAGATTTCCTCTTCCAGTAATGCTGATGCAGTTTCTCTAGCGCAGCAGCCGGTGTGTGTCCCAGCTGCAataggggcggggggggggggaacagaaAATGTAGCAGGATTTTTTGGCATGGTTCTTGttggaattaaaaacaagaaactgaagaaaactacagaataatTTATATGGAAggttagaaaacaaaaacaggaaacaaacctactaaaactaaaatggacACAAAAGATAACAGATTTAAGTTGGGGTTAAAAGCAGGTAGGTCTCAAGAcgcatttaaaatgcaaatcacacAGCTCGAGTTAGACACTCAAATCAGTTCAGGGAGCTTTCTACAcatttgtcaaatgtattaaagtgAGTTAGATTAGAAATCAGATGTGCTTCTAACAAATCACAAGGTTAGGTTTTTTACCATTGATTTTGGCCGATATCTGATTGATATCAAAGTCATCGTGATCAGCAGCATCCTGGGCTAGGCCCACCCTGCTGGAGAAATACTGGGAGAAGGCTCCAGTGGTGCTCACGCCCGGCTGCTGCTCACCCCTCCTGGCTGGCACGGCGGGGGGCTTGGCCATCTGGAAGTCCTTGAACATATCCTTCACATTCTTCTGCTCCTTCTCCCctagagggtccagggcactgAAAGCACTGTTCTCCACTTTCGGGGCTTCTTTCAGGGGCGCTGGCCGAGGcgggggctgggggggagggCTCATCTGCTGGAGCCCTGGCATGAGCCCTGGGGAGGCACCAGGAAACATGCTGGCCTGGAAGGGGTTTGAGAAGTTGGAAGGCTGAGGCCAGGCtgcagggggggtgggggctggcGTCTGACCCCAGGCTGGAGGCTGAGGTACAGGGGCCACCCCGAAAGGCGATGGCTGCCCCCAACCAGGGACTGGGGAGACCCCAAAGGCTGCGGGCTGGCCAAAAGCAGGTGGTTGAGGACCCCCTATTGACCCCTGTGGCAGAGCACCAGTGTTGAACATAGGTGTGGGGGGCGATCTCCATGGTCCTGCTCCTGGTGGGGGGGCTATCTGAGCTCCTAGTGCCAAGGCTc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97443 lncRNA upstream 65536 15653988 ~ 15654643 (+) True G78100
TU97394 lncRNA upstream 186092 15524630 ~ 15534087 (+) False AMCG00010116
TU97364 lncRNA upstream 411533 15307050 ~ 15308646 (+) True G78032
TU97343 lncRNA upstream 487980 15228893 ~ 15232199 (+) True G78012
TU97337 lncRNA upstream 498524 15204674 ~ 15221655 (+) True G78007
TU97478 lncRNA downstream 5246 15729140 ~ 15735727 (+) True G78129
TU97635 lncRNA downstream 741670 16465564 ~ 16547492 (+) False AMCG00010144
TU97689 lncRNA downstream 948592 16672486 ~ 16672909 (+) True G78299
TU97690 lncRNA downstream 950215 16674109 ~ 16674619 (+) True G78300
TU97693 lncRNA downstream 959023 16682917 ~ 16683174 (+) True G78302
AMCG00010124 mRNA upstream 10673 15700099 ~ 15709506 (+) True AMCG00010124
AMCG00010119 mRNA upstream 78875 15628345 ~ 15641304 (+) True AMCG00010119
AMCG00010117 mRNA upstream 162002 15534997 ~ 15558177 (+) True AMCG00010117
AMCG00010116 mRNA upstream 186133 15524446 ~ 15534046 (+) True AMCG00010116
AMCG00010115 mRNA upstream 205484 15492623 ~ 15514695 (+) True AMCG00010115
AMCG00010125 mRNA downstream 24231 15748125 ~ 15800521 (+) True AMCG00010125
AMCG00010127 mRNA downstream 166564 15890458 ~ 15912424 (+) True AMCG00010127
AMCG00010134 mRNA downstream 218715 15942609 ~ 15943250 (+) True AMCG00010134
AMCG00010128 mRNA downstream 247990 15971884 ~ 15984826 (+) True AMCG00010128
AMCG00010126 mRNA downstream 262281 15986175 ~ 15988477 (+) True AMCG00010126
TU97434 other upstream 77338 15640961 ~ 15642841 (+) False AMCG00010119
TU96770 other upstream 4019098 11700706 ~ 11701081 (+) True G77541
TU96625 other upstream 4564710 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 14356345 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 14385129 1333967 ~ 1335050 (+) True G75807
TU97557 other downstream 333637 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 1499988 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 1521743 17245637 ~ 17246988 (+) False AMCG00010160
TU97800 other downstream 1550493 17274387 ~ 17277998 (+) True G78396
TU97819 other downstream 1620525 17344419 ~ 17353488 (+) True G78410

Expression Profile