RNA id: TU97800


Basic Information

Item Value
RNA id TU97800
length 1466
RNA type TUCP
GC content 0.35
exon number 4
gene id G78396
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17274387 ~ 17277998 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaagaagaagagattaataacaaacaagttCATGAGCACATGGAACAGAAGGggcagctgaaaaaaaaagcaaatgcaggctttaaataaaatttcACCTACGTTATGCTTTGATTGGGTGATACAAATTTTCCTATGATGTAAAGTGatgattcagatttttttggGCCCATTCTTCCCCTATTTGAGCCTATAAATCTCCAGGTTGTGCATGCATGTCTGTCACATCTCTGATAAGACAGAAGTTACCATCGCAGCCTCCTCCACAAAGACTTGACAAGATGACTGCTGTGAGAACCTTCCTGCTGGCTACCCTTGTGGTCTGCTGTATTGCATCAAGCGATGCCTTTTTCGAAGCACTTTCAATGAAGTGTCAGTGCCTGAAATATACCCCTAAGCCTATCAACCCAAGGGAATTTCACCACATTGAAATCATTCCCCAAGGGCCCCGGTGTCGTCAGGTTGAGATCATAATCACCttgaaaaatggaaataaagtcTGTGTTTCTCCTGATGCCATTTGGATCAAAAGTATCATTCAGTTCATCGTGAACAGcAAGAAAAACCAACATTAGGCAAATGGCCAACGACACAAGTGAAGCTGATAAACGGAAAATGGGTTTACATTAATTGATTCTGTGAACATACCTATTGTGCTTTATTGTAATGGACTTGTACACTATCTGCATTGCTGTGCATCCAGTCCTTCTGTGATGAATacaactgacatttaaaagctAACATACCATGGTGCTTCAGAACCATGTGAATTATGaactatgtttttattttataagctcAAGGAAACAATGTTTATTCTCATACAGGATGGGATTTGCCTTTAAATagaaagacattaacatttaaactgGGCATTATAACATAGTTAAATTGagtgcaatacaaataataaataaaaggcagatAACATAGTGGTATAACCAAGTTCGCATTGCTTGTTTGCCATTATTTAGAaggtaaaatgtttaattatttcattgaaTTGGCAATATTCAAATCCCATCCTGTCTTAAAATGTCCAAGTGACAGTGGACTTATGTGGTCAGTTATACAGGCTAGCTATACTGTGAAAAAAGTGAGTTGTGCAAGAATGTTTTTGTACAAtataactttaatttgcattgtcaagtgtataataaatgtattctacaTTTACTTATACATCCATATAGTCCTAagaatttttaaaatctgtgaaatacaaaaataggataaaagcattttttacTTTATGAATTAGCCATGATCTCATAGATGTAGGTATTTGAAGTAAACAGGATGTGTACAACTGTTAGACTcactttgattaattaaattgtattatttttttcttaatgaggTATCTGCTGGTTTTCTGTCTCTGTATAAAACAGtgtgctgtctgtctgcaaaACTTGCATATAACAATAAACATACAGGCAAAGGCCTGTGTAACTTTCAAAGT

Function

GO: NA

KEGG:

id description
ko03010 Ribosome
ko04672 Intestinal immune network for IgA production

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97796 lncRNA upstream 18958 17255222 ~ 17255429 (+) True G78392
TU97789 lncRNA upstream 32902 17239050 ~ 17241485 (+) True G78385
TU97785 lncRNA upstream 45542 17226891 ~ 17228845 (+) True G78381
TU97781 lncRNA upstream 52281 17220036 ~ 17222106 (+) True AMCG00010164
TU97728 lncRNA upstream 211475 17054873 ~ 17062912 (+) True G78334
TU97971 lncRNA downstream 242269 17520267 ~ 17520854 (+) True G78529
TU97972 lncRNA downstream 242269 17520267 ~ 17520650 (+) False G78529
TU98002 lncRNA downstream 516442 17794440 ~ 17845546 (+) True G78546
TU98069 lncRNA downstream 698176 17976174 ~ 17977305 (+) True G78607
TU98099 lncRNA downstream 780721 18058719 ~ 18077267 (+) True G78635
AMCG00010168 mRNA upstream 13384 17251247 ~ 17261003 (+) True AMCG00010168
AMCG00010160 mRNA upstream 27237 17245585 ~ 17247150 (+) True AMCG00010160
AMCG00010164 mRNA upstream 49049 17220036 ~ 17225338 (+) False AMCG00010164
AMCG00010163 mRNA upstream 81037 17187429 ~ 17193350 (+) True AMCG00010163
AMCG00010153 mRNA upstream 499672 16769582 ~ 16774715 (+) True AMCG00010153
AMCG00010162 mRNA downstream 16069 17294067 ~ 17303416 (+) True AMCG00010162
AMCG00010161 mRNA downstream 26982 17304980 ~ 17311881 (+) True AMCG00010161
AMCG00010167 mRNA downstream 37547 17315545 ~ 17317008 (+) True AMCG00010167
AMCG00010166 mRNA downstream 39175 17317173 ~ 17334410 (+) True AMCG00010166
AMCG00010165 mRNA downstream 85173 17363171 ~ 17376938 (+) True AMCG00010165
TU97792 other upstream 27399 17245637 ~ 17246988 (+) False AMCG00010160
TU97783 other upstream 49047 17223882 ~ 17225340 (+) False AMCG00010164
TU97557 other upstream 1214300 16057531 ~ 16060087 (+) True G78198
TU97434 other upstream 1631546 15640961 ~ 15642841 (+) False AMCG00010119
TU96770 other upstream 5573306 11700706 ~ 11701081 (+) True G77541
TU97819 other downstream 66421 17344419 ~ 17353488 (+) True G78410
TU98227 other downstream 1641913 18919911 ~ 18921444 (+) True G78743
TU98291 other downstream 1809331 19087329 ~ 19087754 (+) True G78794
TU98308 other downstream 1860005 19138003 ~ 19139647 (+) True AMCG00010216
TU98991 other downstream 4768120 22046118 ~ 22047542 (+) True G79382

Expression Profile