RNA id: TU97819



Basic Information


Item Value
RNA id TU97819
length 1183
RNA type TUCP
GC content 0.42
exon number 2
gene id G78410
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17344419 ~ 17353488 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTTTAGTCGAGGTATATGTATTCCATATattcattacaaaattaaatcaaggaGATTTTTATGTGCGTTTATTGTCCTTCATTGTATTGATATAAGGAGTATGCGGCCACaacaaatatttccaaaaatacatatactttaTTAGGTAGGCTACACCAGCCTGTATTATTgtgcaatgttttatataatcaactttttctaaataataccaaaatgttaaaatatcgACTCATGACTACCATAATACAAGTCATATTTTTCCTTGGCCTACACATTCATATAGTGAGCAATATATTACTTTATTCTGTTTCAATAAGCATGGCAGCATCCTTTCAGTTCATATCTATTTTGATACCATTATTTTAAGGTAACTGCAAAAGACTTTCATGTACTTAAAATATTCAACCTCATATAGTATTTAAAACCCaggattaaataataataataataataataataataataataataataataataataataatgttgttctATATGGTAAAAAATGACCGAGGCATTGCATAAACTGGGATTTTCCTTAACCACATGCACAGGGACAGTCAGGCTTCCAATCCCAAACACTGGAAAACGATCCAAGACCACTGTGGCCAACAGCACACAATCTTGCATGTCTGTCTCAACAAGGTTATGGTACAGACTACACTTTACCACCTCGTCAATACCCGTATGAACACGTTCTCCGTGTTATAAAAGCAAACCGCATCTGAATCAACAGATCCATAGATGCGTTACAGCTTTCAGTCTGACTTTCTAACATGCCTCAAGTCTTCCCAAAGTCATGGAGGGCTCAGATGTATTGCACTGGTTTCCTCTCTCGCATGGTTCACAGGTCGGCGTCAGCGGGATGATTGCGGACAACGTGGGGTCTGTTCATTTTCTTGGGGGCCCGGAAATCTCCGTCGTCCAGGGAGTCCCTTCTGTAGGGGACACTGCTGTCCGACCGGGTGGTTATGCTGGCGATGTCGATGGGCGGCCTGCTCCTCACCCGGTGGTTGTTGGCTTTCGGCGCCGGTTCCGCGGGGATACGAGGAGACCACGTGTTCATGGTGTCGCCCTCCTCCCACTTCCGGCAACATGGAAACAACCAGATGACCAACGCGGCGCCGGCCAAGATCTCCATGATGGCGCCAATGTAGCCCAGGATAAGGCAGTAACCNNN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU97796 lncRNA upstream 88990 17255222 ~ 17255429 (+) True G78392
TU97789 lncRNA upstream 102934 17239050 ~ 17241485 (+) True G78385
TU97785 lncRNA upstream 115574 17226891 ~ 17228845 (+) True G78381
TU97781 lncRNA upstream 122313 17220036 ~ 17222106 (+) True AMCG00010164
TU97728 lncRNA upstream 281507 17054873 ~ 17062912 (+) True G78334
TU97971 lncRNA downstream 166779 17520267 ~ 17520854 (+) True G78529
TU97972 lncRNA downstream 166779 17520267 ~ 17520650 (+) False G78529
TU98002 lncRNA downstream 440952 17794440 ~ 17845546 (+) True G78546
TU98069 lncRNA downstream 622686 17976174 ~ 17977305 (+) True G78607
TU98099 lncRNA downstream 705231 18058719 ~ 18077267 (+) True G78635
AMCG00010166 mRNA upstream 10009 17317173 ~ 17334410 (+) True AMCG00010166
AMCG00010167 mRNA upstream 27411 17315545 ~ 17317008 (+) True AMCG00010167
AMCG00010161 mRNA upstream 32538 17304980 ~ 17311881 (+) True AMCG00010161
AMCG00010162 mRNA upstream 41003 17294067 ~ 17303416 (+) True AMCG00010162
AMCG00010168 mRNA upstream 83416 17251247 ~ 17261003 (+) True AMCG00010168
AMCG00010165 mRNA downstream 9683 17363171 ~ 17376938 (+) True AMCG00010165
AMCG00010174 mRNA downstream 50067 17403555 ~ 17406905 (+) True AMCG00010174
AMCG00010173 mRNA downstream 55576 17409064 ~ 17418206 (+) True AMCG00010173
AMCG00010175 mRNA downstream 66125 17419613 ~ 17431129 (+) True AMCG00010175
AMCG00010177 mRNA downstream 80953 17434441 ~ 17440347 (+) True AMCG00010177
TU97800 other upstream 66421 17274387 ~ 17277998 (+) True G78396
TU97792 other upstream 97431 17245637 ~ 17246988 (+) False AMCG00010160
TU97783 other upstream 119079 17223882 ~ 17225340 (+) False AMCG00010164
TU97557 other upstream 1284332 16057531 ~ 16060087 (+) True G78198
TU97434 other upstream 1701578 15640961 ~ 15642841 (+) False AMCG00010119
TU98227 other downstream 1566423 18919911 ~ 18921444 (+) True G78743
TU98291 other downstream 1733841 19087329 ~ 19087754 (+) True G78794
TU98308 other downstream 1784515 19138003 ~ 19139647 (+) True AMCG00010216
TU98991 other downstream 4692630 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 5004481 22357969 ~ 22378809 (+) False G79420

Expression Profile