RNA id: TU98002


Basic Information

Item Value
RNA id TU98002
length 2013
lncRNA type sense_over
GC content 0.36
exon number 6
gene id G78546
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17794440 ~ 17845546 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taaataataatgatNNNNNNNAACAAACAagtacaaacacatacaaagtAAAGTACATatcttaaaacaacaaacaaaacaatatataaaaaaaagctttgaaaaaacTTAATCAATTCATCAatttaatacattgtatttgaGCTTAGCTGCTTTGCTACTGTCGTTGAAGACACTGAATTGAGCAGGGTATAGCATTCTGCCATATTGCTTTATAAGGTATTAAAGACtcagaagataaaaaaaaaatgtaactgctattcttaaagaagaataaaaaaacacattcttgtgAAACGTAAAGATTCATAACATTTTCTCTGTGGAGCCTTGATTAATGTGTCCTACCTTCCAAAATGCTATTTTAAAAGAAGAACaagttttgtttggttttgttttgactttCTCCATTAGTAATAGTCATAGGCAGTgtgttaaactgtattttatgaGAGACTTTACACATCTGACACCTGATCTTTTGCTTATTTTAGTCCTTCACAGTGTGAATTCACATCAATTATCAATATTTGTGTTTGCTAACTAAAATAAAGGACAGCTGAAGAAACAATGTTGATACTAAAATATGTTTACTGCTTAAGTCATAAAACACGAAAACCatgcatttttgtatgtatatgaaattaatacagtgctgattaatatttataaatgtttaaaaaagaaaattcagtggttcaattaaacttcagttaattaaattcatGCCTTACTTTTCCCCTTTCCTGAACTAATTGTAAATGcattgcttctgaaaataataaaatcctttCACTCAACACGTATTCAATTATCACATATATGGTCAAAGGAGAATTTTAAAAGCTTATCATAACTTCTGTATGGTACTCCATGCTATTACATGGAGTGTGCCTTAAATTCCTACTTCTCGATGGGAAATTCACCTAATTACTTCATTCTGGCCTGTTCGCACATCCTGTTTATTACTAGATGCACATTTGTCCATTGCTGGCATAGTTTTAAAGTGTTTGGAAATTGTACTACTCATGctgtaaatgtgtgaaataatgAATAGATAGAAAAGTAGGAATAATTCACAATGAATCTGATTTGTGCTTTGCAGGCTAATATAcagtcataaaacattaaacccggtcccaaccccccacccccctcagtTAACTTGGTCCTGGAAACAACAACTATCAGTTGAGACTGACTGCAATAAAATGCATCACCActtgatgattattattgttttaaaaaaatgaatcccACTCTCCCTTCTGGAATATTGAATGCCGAACAGTAAACTGGAAAATCACAAGTTTTACGTCCTCTACTTTCCATAACAGCATTGACAACTTTTGTTCAATATATatagtgcatttgtttttgtaatatcacattttaatgGTCATTTGTTCCCCTCCCAAATCCAGTGACCTTCTGTGAGTTTATGAAGGTCTCTCTTCAAGCTTTCTACTTTCCCCGCCTCAGGCTATGGCACCTTTTAGgcTGAAGTTCTTGGTCCTGCACATGGCCCATCTCGAGTCCACCTTGATCTTCAGATCCTTCACCCAGGCTAGTCCAGTTGGGGCACACAGTCTCAGTTCACCCTTGGTAATGAAgctgaTGCACTAATGTCACAGCCGTCACCAACTTTTTGACTCATGTAGGTTCTCACCACGTGGAGGGGGATGGGCTTGTCACTGACCCTCAGGCAACAGTCTTTTGCCATGTTGATGTCTCCTTGAGCAGAAGATGAGGAATGTGGAGATGCAGACAGATGTGATGCTGGAAGCCATGGTGGTATCAGCTGTTATCTTCTTGACaaggatggagagagaaagcTCTTGCTGCTGGACTCTTTACAATCTCCAAGCCTTGCTGAAGCTCCAGTGCACTGCTGTCTGCTGAGAGATGGCATCTTCCCTTTATGCCCAGATGTGGTTTCATTATGATACATGTAGGAAGTCCAGccctcctcccctccacccctcctttttttccctgaatgttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97971 lncRNA upstream 273586 17520267 ~ 17520854 (+) True G78529
TU97972 lncRNA upstream 273790 17520267 ~ 17520650 (+) False G78529
TU97796 lncRNA upstream 539011 17255222 ~ 17255429 (+) True G78392
TU97789 lncRNA upstream 552955 17239050 ~ 17241485 (+) True G78385
TU97785 lncRNA upstream 565595 17226891 ~ 17228845 (+) True G78381
TU98069 lncRNA downstream 130628 17976174 ~ 17977305 (+) True G78607
TU98099 lncRNA downstream 213173 18058719 ~ 18077267 (+) True G78635
TU98157 lncRNA downstream 604944 18450490 ~ 18450809 (+) True G78682
TU98243 lncRNA downstream 1117977 18963523 ~ 18963725 (+) True G78758
TU98245 lncRNA downstream 1125749 18971295 ~ 18971714 (+) True G78760
AMCG00010185 mRNA upstream 19753 17739134 ~ 17774687 (+) True AMCG00010185
AMCG00010186 mRNA upstream 69566 17713115 ~ 17724874 (+) True AMCG00010186
AMCG00010187 mRNA upstream 92939 17666736 ~ 17701501 (+) True AMCG00010187
AMCG00010176 mRNA upstream 329351 17455468 ~ 17465089 (+) True AMCG00010176
AMCG00010177 mRNA upstream 354093 17434441 ~ 17440347 (+) True AMCG00010177
AMCG00010191 mRNA downstream 99686 17945232 ~ 17954544 (+) True AMCG00010191
AMCG00010193 mRNA downstream 123664 17969210 ~ 17973694 (+) True AMCG00010193
AMCG00010194 mRNA downstream 145242 17990788 ~ 17995377 (+) True AMCG00010194
AMCG00010197 mRNA downstream 160673 18006219 ~ 18009050 (+) True AMCG00010197
AMCG00010192 mRNA downstream 176146 18021692 ~ 18034151 (+) True AMCG00010192
TU97819 other upstream 440952 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 516442 17274387 ~ 17277998 (+) True G78396
TU97792 other upstream 547452 17245637 ~ 17246988 (+) False AMCG00010160
TU97783 other upstream 569100 17223882 ~ 17225340 (+) False AMCG00010164
TU97557 other upstream 1734353 16057531 ~ 16060087 (+) True G78198
TU98227 other downstream 1074365 18919911 ~ 18921444 (+) True G78743
TU98291 other downstream 1241783 19087329 ~ 19087754 (+) True G78794
TU98308 other downstream 1292457 19138003 ~ 19139647 (+) True AMCG00010216
TU98991 other downstream 4200572 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 4512423 22357969 ~ 22378809 (+) False G79420

Expression Profile