RNA id: TU98099


Basic Information

Item Value
RNA id TU98099
length 3068
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G78635
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 18058719 ~ 18077267 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAACGAAATTGATAGAGACACCTACGTTTTAGGGTCATGCCTGCCTTTCTTTAATAAAGGCGGGGTCTaagcttttattttcttggacTGGGGCAATACATGCATTGTCTCCTGTATTGATTTACAAACGAGTGTTTAACAGGGTTGCTGTCTTTACCAAGGATCGTCCAATGTCAGTAGTGCACAAAAAGTCGATTAATCAAGTTCAGCTAGTTCACCGGTCGGGCGCTGCCTCTGATCGTGTACCTCCACACAACAAGCGGCTTCAAAGACCTGATGCTCCGTCTGCGCAAAACTTAAAAATCGCCTTTATTCGGTGTCCCTGTGTGTTACACTTCACAGCCCCACTGGCCAGTGCCGCACTTTTGCTTGTGGTGCTATAAAACCACGCATTGCCATTCAAACTtgtggatctctctctctccctccctccctccctccctccttctctatTGACAACGGGAATGCCAGTGCGCTTCGCCCAATGAGGCAGAGCCGCACACACCCGCAAAGACGGACACAAGATGTGCACTGATGGATTGACAGCAGAAGCCCTGGATTGCAACAATCATTTGAACCGCTGtctgccttttgttttgtattggcCGCTGGATCTTTCCATCAGGGATCGTGAATGTGGATGCAAGGACCACCTAGATCGGAATTGTAGTTATTGAAGAGGATTGGCGGTTGCTTTCTCAGATGCCATCTCGTCGGCAGAATTAAAAGGGGATaagtACAAAGAGGCACTGTCTTCAGCACAGAAGGGGAAGCACAGCTGCCCTGACCATTCCTCTGTagcttcattcattcatctatTTGGTCTATAAGCTGGGATAAAAGTcaaaagcagaacatttttgTGGGCTCCCTCCAGAGTACAGGGATGAGAAAATAATGCTTTGATTGAAGCCTGTGCAGAATATGTCCTAGAGCAAAGTTCGTGAATGGTTATGCAACTAAGAGCCACATGGTTTCCTTCATGGTCGACAATTGTACATGCAGTTGTACAGCCCAAGAACATCCAGAATACACTGACCAGGAAGTATAGAAATACACAAAGGAAAGAGACACAGCTAAAGTGAACCGAACTGAAGATACGCTAGAGAACAATCTTCATAATTAACACACATGGATTGAGACAGCATTGGAGTGCAGCATCTTTAATATCTAGTTCTTCTAATCCTGTGCATGTGTGCTGGAGTGGAATACATTTCTGTCTGTCCGCCCCTTGAGGACTCAAGCACTTTCTGTAATCCTCTCTCTGGAATCTGTGGACCAGGCTCTTTGTTCCTCATGGAGTCTGGTGTGAGCACAGGACTCTCCACAGGGGCCATTGTGGCCATTGTCTGTAACTCTTTGGTGGCTATTTTGATTTTCATCCTGTTTGTGATCTTGTACAAAGCCTGCAAGGTCCCCTCTAACCAGGAGAAGGTTCCCGTCTTGGCTACAGgacaagaacagaaaaaaaatgaacaaaaatacttGCTGACGCCCTAACAAAGAATCTCTGATGTCTGCACTTCCATTCTGCCAAGGCTCAATATGTTTTCCTAACTTGGCTTTCATAAACCAGACAGCTGCCTTAGACCTGCTGGATTTAATATCcatatctgtttttcttttaagttcATCAGGAAATGCCACCATGGAATATGCATTTCTTTAGCACAGCTTTTACCAATCACAAGGGGATTGAGTATACAGGAGTGCTGGTAGACTGGGGTGGTGGCTGCATCCCAATTAGGTATATTTAGTATGCAATATTTATACAGAGAGACCTTAGTGGTCGAGATCACGTTAGCACTGTGTCCCCAAAGCCTTGACCTGGGTCTTGCAGTGATCAGCTGCATGGACTACCTTAACCGCAATGTCTGGAGTATAAAGAAGGTGTAAAAACCCATGCTCTTTAAATCTATCGATTTAGGGCAAAGTACTCTTTTCAGGAGGTCTGATGATTGGCCAATCTTAAATCCACAGTCCTTCTGAAAAGTTCAGGGCAGATGGAACGTAGGGATGGAGGGAAAGCTGCTGAACCCCTAACCACCTTCAGCACATCTTCCTAGCTGCCACTTTATCACATTGGCCTGCCATAGCCACATGGAGTGTATACATAATGAGTCAACTGGAGATGTGTGGTCTAGCAAAATAATACATGAGATCTAAAGCACTGACTTACAGAGGAGTCCATCTCTAGATATCTGACTGTGTGAAAACCTGATCTTATGGTGACCACATTGCCACAGGGAGTCTGTATGTTTACTCCCAGAGGCCTGTTCACCCTAGTTAATCTTTAAACAGCACAGCAGGAAGgatattaatttaactttggAATCATTTGTGAGAATATAAAAGCTAAAAAATAAAGAGGAGTCTGTTCAGCCCCTTCCTGCTTGTTAGGTAGTGTTTTTCACTGAATCATGAGGATCAGACGGACGTTTCTTCTAGGAGTCAGCTGTCACATACAACCCTCTGAAAAGATCTGTACAACAGCATTGGCAAGGCAAGAGGGACGTAAAACATTAAGATGCCTACATGTGGAGGTTCTACTTTGATAGCAGGCACTAGACTGGGTTTCCATACTGACAGAGATTGGCACATTGTACTTCCACAAAACTGCAAACCACTGACCCAAATGCTTCCAAATCTTGCTCTATTCCAAAAGGTTTTTGACTATTCCAAAAAACAGAGgaagggtatttttttttttttaatattatattagtatttcCATCACaataccttttttattattaaaaaaaatatggtttGATTTGTGCTTGGGTGAAATTTCATTGATACATATTGTGGGACATGTGtctcataataaaataattgttcgtTCTTAGGTGTGAGGGAACAGCAACAAAAATCCTCAAAAGTTTATCTTGTAGTGAGGTACTACATTCCCTAGTTtcttcaatacaaaataacctCAAAAATAATAGTCAAATAATGAAATCCgatattttaattatcagaTTCTGATTTAACCCCATCAAACATTAGAATGTTTGAAATTATTAAAGATTGATTGTTTTCCACTTCATTGTTGAAAATATGGCATT

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98069 lncRNA upstream 81414 17976174 ~ 17977305 (+) True G78607
TU98002 lncRNA upstream 213173 17794440 ~ 17845546 (+) True G78546
TU97971 lncRNA upstream 537865 17520267 ~ 17520854 (+) True G78529
TU97972 lncRNA upstream 538069 17520267 ~ 17520650 (+) False G78529
TU97796 lncRNA upstream 803290 17255222 ~ 17255429 (+) True G78392
TU98157 lncRNA downstream 373223 18450490 ~ 18450809 (+) True G78682
TU98243 lncRNA downstream 886256 18963523 ~ 18963725 (+) True G78758
TU98245 lncRNA downstream 894028 18971295 ~ 18971714 (+) True G78760
TU98257 lncRNA downstream 929022 19006289 ~ 19010099 (+) True G78772
TU98259 lncRNA downstream 929022 19006289 ~ 19009946 (+) False G78772
AMCG00010192 mRNA upstream 24568 18021692 ~ 18034151 (+) True AMCG00010192
AMCG00010197 mRNA upstream 49669 18006219 ~ 18009050 (+) True AMCG00010197
AMCG00010194 mRNA upstream 63342 17990788 ~ 17995377 (+) True AMCG00010194
AMCG00010193 mRNA upstream 85025 17969210 ~ 17973694 (+) True AMCG00010193
AMCG00010191 mRNA upstream 104175 17945232 ~ 17954544 (+) True AMCG00010191
AMCG00010200 mRNA downstream 93403 18170670 ~ 18177842 (+) True AMCG00010200
AMCG00010199 mRNA downstream 110911 18188178 ~ 18202438 (+) True AMCG00010199
AMCG00010198 mRNA downstream 136748 18214015 ~ 18218373 (+) True AMCG00010198
AMCG00010201 mRNA downstream 600954 18678221 ~ 18684640 (+) True AMCG00010201
AMCG00010204 mRNA downstream 699189 18776456 ~ 18805818 (+) True AMCG00010204
TU97819 other upstream 705231 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 780721 17274387 ~ 17277998 (+) True G78396
TU97792 other upstream 811731 17245637 ~ 17246988 (+) False AMCG00010160
TU97783 other upstream 833379 17223882 ~ 17225340 (+) False AMCG00010164
TU97557 other upstream 1998632 16057531 ~ 16060087 (+) True G78198
TU98227 other downstream 842644 18919911 ~ 18921444 (+) True G78743
TU98291 other downstream 1010062 19087329 ~ 19087754 (+) True G78794
TU98308 other downstream 1060736 19138003 ~ 19139647 (+) True AMCG00010216
TU98991 other downstream 3968851 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 4280702 22357969 ~ 22378809 (+) False G79420

Expression Profile