RNA id: TU98157



Basic Information


Item Value
RNA id TU98157
length 320
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G78682
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 18450490 ~ 18450809 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


caaggttcgtgatcttgaggctcagcttgtcgatctgcgctgtattagggatatagaagaattggtcaatcagcccatgagagaaatggtgtgcacgccaaaacctaggagagttgagaccttagagaagacagcatagagaactgctggcttacagtaggtcgtaaccgcagaaaagggcgtgcacaacccctagagacaccccaagagcttgaattgcccaacaggttccaactgctggacaccgagttggacagtgacagctcagagggtgatggggggcagttgagcaccagagcaccatggtgcccattCCCCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU98099 lncRNA upstream 373223 18058719 ~ 18077267 (+) True G78635
TU98069 lncRNA upstream 473185 17976174 ~ 17977305 (+) True G78607
TU98002 lncRNA upstream 604944 17794440 ~ 17845546 (+) True G78546
TU97971 lncRNA upstream 929636 17520267 ~ 17520854 (+) True G78529
TU97972 lncRNA upstream 929840 17520267 ~ 17520650 (+) False G78529
TU98243 lncRNA downstream 512714 18963523 ~ 18963725 (+) True G78758
TU98245 lncRNA downstream 520486 18971295 ~ 18971714 (+) True G78760
TU98257 lncRNA downstream 555480 19006289 ~ 19010099 (+) True G78772
TU98259 lncRNA downstream 555480 19006289 ~ 19009946 (+) False G78772
TU98262 lncRNA downstream 562593 19013402 ~ 19013758 (+) True G78774
AMCG00010198 mRNA upstream 232117 18214015 ~ 18218373 (+) True AMCG00010198
AMCG00010199 mRNA upstream 248052 18188178 ~ 18202438 (+) True AMCG00010199
AMCG00010200 mRNA upstream 272648 18170670 ~ 18177842 (+) True AMCG00010200
AMCG00010192 mRNA upstream 416339 18021692 ~ 18034151 (+) True AMCG00010192
AMCG00010197 mRNA upstream 441440 18006219 ~ 18009050 (+) True AMCG00010197
AMCG00010201 mRNA downstream 227412 18678221 ~ 18684640 (+) True AMCG00010201
AMCG00010204 mRNA downstream 325647 18776456 ~ 18805818 (+) True AMCG00010204
AMCG00010203 mRNA downstream 400348 18851157 ~ 18866491 (+) True AMCG00010203
AMCG00010202 mRNA downstream 423953 18874762 ~ 18881791 (+) True AMCG00010202
AMCG00010212 mRNA downstream 620118 19070927 ~ 19080716 (+) True AMCG00010212
TU97819 other upstream 1097002 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 1172492 17274387 ~ 17277998 (+) True G78396
TU97792 other upstream 1203502 17245637 ~ 17246988 (+) False AMCG00010160
TU97783 other upstream 1225150 17223882 ~ 17225340 (+) False AMCG00010164
TU97557 other upstream 2390403 16057531 ~ 16060087 (+) True G78198
TU98227 other downstream 469102 18919911 ~ 18921444 (+) True G78743
TU98291 other downstream 636520 19087329 ~ 19087754 (+) True G78794
TU98308 other downstream 687194 19138003 ~ 19139647 (+) True AMCG00010216
TU98991 other downstream 3595309 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 3907160 22357969 ~ 22378809 (+) False G79420

Expression Profile