RNA id: TU98227


Basic Information

Item Value
RNA id TU98227
length 1510
RNA type TUCP
GC content 0.43
exon number 2
gene id G78743
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 18919911 ~ 18921444 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttggaaaaaaaaatacatcaatagacttttatttaactttttttgtttgttagtttttgtttgatGTTTAACAATATTTTCAGACTCAtaatttgtaaaaacatttcatgaAGTGTATATAAAAGAGGGCACcaccagaaacaaaaacagattagttaaattaatttgtatatacatgtatgtatgtgcatgtgtacataatatatacacacaggcatacatgtatatatatatatatatttatatatttatatataaaataaaagtgatgGTTATTCATTAGATATATGGTCATTTATTTCTCGTTTTGTTCTAGTACCATACAGACACACGTAGTACCATGACGCACAATGACTGCCTGCAGTGGTCTttcacagaaagacagagaaggcaaagtaataaataatgtcCTGTCTCTGACCGCCTGAGAGGGGAGAGACCACTCGACTAATAAAAACTCAGAagcaacagaaacacacagaggacCATGATGGGACCACAATGGTGGGAGAGAGGGCTGCGactacagtgaataaataaGAACCGTCACGATCAGGAGGATCGAGtccaacaaccaaaaaaaaacaattaaaagacaaagaaacaaatcctCCAGTTCCTGGGATGGACAGGTTTGGGTTTCCACTCTTCAGTCCTCTTAGCTGTGGGCGTCCTGGACAGTACGGTGCGTATGGCTGGCCTATCTCACGAGGAGAGACGTTCACACTGACTGTGCTGGAGCAGGAGGGCGAGGCgtcccaaaaaacaaaccaagaaaaaaaggaaaatctaaTTTCCAACATGGTACAACGTCATCATTCCAGCTCTCCACTCGGTCACCAGCCTCCCCTACAGGGTCTGCGTCCGTCAGTTCTCTCTGCAGACTCACAGACCAGTCTCAACACACCGGAGACATTAGGCTTGCTCGGTTTGTTATCTTACAAAGACTCCCTAGAATAAAGGTTCATAGTTGTCTCTAATAGGACTTCAATGCTGGTGTGATCATCTCAGAAGAAATCTGTCCAGTCCAGAAGAAGGGAATGGTCTTTGCTCCACTTTTGTTTCACATCTTTATCAgccccattctctctctctctctctctctctctctctctcacgcttcAGATCTACCAGCTGATGCAGGACGACTAgacgaaaaacaaaaagctcatCCTGCTGCTTCCTGAAGACTAGAGATaaaatcaaattgaattaaaacaaaaacaaacaaaaaaaacaggtggGGCTGAAGAGAGAAGTGATGGATGTTTGTGGTGGAGAGATGGAGCGAGGGGTGGATAGAAGGAaggatagatggatggatggataaacaGGCAGGCCGGCTGGCTCGGTGCTAGCTCCACAGTCCCGCATAGTTGCCATGCAGCCCGGAGCACAGCGGCCCCCCAGCCACGAACAGCTTGGTGCCGGAGGTGTCGTAGCAGTGCGTGTACACTGCGTTGGGGAATGAGCTGATGTCCGAGAAGTAGCTTCTCCACGTCTCGTCGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98157 lncRNA upstream 469102 18450490 ~ 18450809 (+) True G78682
TU98099 lncRNA upstream 842644 18058719 ~ 18077267 (+) True G78635
TU98069 lncRNA upstream 942606 17976174 ~ 17977305 (+) True G78607
TU98002 lncRNA upstream 1074365 17794440 ~ 17845546 (+) True G78546
TU97971 lncRNA upstream 1399057 17520267 ~ 17520854 (+) True G78529
TU98243 lncRNA downstream 42079 18963523 ~ 18963725 (+) True G78758
TU98245 lncRNA downstream 49851 18971295 ~ 18971714 (+) True G78760
TU98257 lncRNA downstream 84845 19006289 ~ 19010099 (+) True G78772
TU98259 lncRNA downstream 84845 19006289 ~ 19009946 (+) False G78772
TU98262 lncRNA downstream 91958 19013402 ~ 19013758 (+) True G78774
AMCG00010202 mRNA upstream 38120 18874762 ~ 18881791 (+) True AMCG00010202
AMCG00010203 mRNA upstream 53420 18851157 ~ 18866491 (+) True AMCG00010203
AMCG00010204 mRNA upstream 114093 18776456 ~ 18805818 (+) True AMCG00010204
AMCG00010201 mRNA upstream 235271 18678221 ~ 18684640 (+) True AMCG00010201
AMCG00010198 mRNA upstream 701538 18214015 ~ 18218373 (+) True AMCG00010198
AMCG00010212 mRNA downstream 149483 19070927 ~ 19080716 (+) True AMCG00010212
AMCG00010213 mRNA downstream 181424 19102868 ~ 19108097 (+) True AMCG00010213
AMCG00010214 mRNA downstream 195291 19116735 ~ 19119081 (+) True AMCG00010214
AMCG00010216 mRNA downstream 217215 19138659 ~ 19184069 (+) False AMCG00010216
AMCG00010218 mRNA downstream 268438 19189882 ~ 19229691 (+) True AMCG00010218
TU97819 other upstream 1566423 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 1641913 17274387 ~ 17277998 (+) True G78396
TU97792 other upstream 1672923 17245637 ~ 17246988 (+) False AMCG00010160
TU97783 other upstream 1694571 17223882 ~ 17225340 (+) False AMCG00010164
TU97557 other upstream 2859824 16057531 ~ 16060087 (+) True G78198
TU98291 other downstream 165885 19087329 ~ 19087754 (+) True G78794
TU98308 other downstream 216559 19138003 ~ 19139647 (+) True AMCG00010216
TU98991 other downstream 3124674 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 3436525 22357969 ~ 22378809 (+) False G79420
TU99038 other downstream 3436525 22357969 ~ 22378809 (+) False G79420

Expression Profile