RNA id: TU98291



Basic Information


Item Value
RNA id TU98291
length 426
RNA type TUCP
GC content 0.48
exon number 1
gene id G78794
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 19087329 ~ 19087754 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aaaagacacgtGTCCACagaagaaatcaatcaatcagattccaaactctccaccatggccaaaaccaaagagctgtccaaggatgtctgggacaagattgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtacgattattcgcaaatggaagaaatacaaaataactgtcagtctccctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaatctgTAACACACTACactgtgaaggactgaaatcctgcagcggccgcaaggtccccctgctcaag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU98262 lncRNA upstream 73571 19013402 ~ 19013758 (+) True G78774
TU98257 lncRNA upstream 77230 19006289 ~ 19010099 (+) True G78772
TU98259 lncRNA upstream 77383 19006289 ~ 19009946 (+) False G78772
TU98245 lncRNA upstream 115615 18971295 ~ 18971714 (+) True G78760
TU98243 lncRNA upstream 123604 18963523 ~ 18963725 (+) True G78758
TU98458 lncRNA downstream 402903 19490657 ~ 19494085 (+) True G78939
TU98500 lncRNA downstream 540972 19628726 ~ 19629439 (+) False AMCG00010224
TU98631 lncRNA downstream 1194605 20282359 ~ 20282722 (+) True G79081
TU98641 lncRNA downstream 1379555 20467309 ~ 20467696 (+) True G79091
TU98660 lncRNA downstream 1543458 20631212 ~ 20631454 (+) True G79109
AMCG00010212 mRNA upstream 6613 19070927 ~ 19080716 (+) True AMCG00010212
AMCG00010202 mRNA upstream 205538 18874762 ~ 18881791 (+) True AMCG00010202
AMCG00010203 mRNA upstream 220838 18851157 ~ 18866491 (+) True AMCG00010203
AMCG00010204 mRNA upstream 281511 18776456 ~ 18805818 (+) True AMCG00010204
AMCG00010201 mRNA upstream 402689 18678221 ~ 18684640 (+) True AMCG00010201
AMCG00010213 mRNA downstream 15114 19102868 ~ 19108097 (+) True AMCG00010213
AMCG00010214 mRNA downstream 28981 19116735 ~ 19119081 (+) True AMCG00010214
AMCG00010216 mRNA downstream 50905 19138659 ~ 19184069 (+) False AMCG00010216
AMCG00010218 mRNA downstream 102128 19189882 ~ 19229691 (+) True AMCG00010218
AMCG00010217 mRNA downstream 142108 19229862 ~ 19245933 (+) True AMCG00010217
TU98227 other upstream 165885 18919911 ~ 18921444 (+) True G78743
TU97819 other upstream 1733841 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 1809331 17274387 ~ 17277998 (+) True G78396
TU97792 other upstream 1840341 17245637 ~ 17246988 (+) False AMCG00010160
TU97783 other upstream 1861989 17223882 ~ 17225340 (+) False AMCG00010164
TU98308 other downstream 50249 19138003 ~ 19139647 (+) True AMCG00010216
TU98991 other downstream 2958364 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 3270215 22357969 ~ 22378809 (+) False G79420
TU99038 other downstream 3270215 22357969 ~ 22378809 (+) False G79420
TU99122 other downstream 3611988 22699742 ~ 22703374 (+) True G79475

Expression Profile