RNA id: TU98849



Basic Information


Item Value
RNA id TU98849
length 921
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G79259
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 21531677 ~ 21532597 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGTTTTGTATCTCttaatataatcattttaatcataattgttattataacaAGGAATAACAGCTGTTGTTACAGTGGAACCAACAATCTTTATTTTGAAGAGACCAAATTTTTAAGCAGTACTTGTAAATgacattcaaattattattctaCAGTTTTGGTGCCTTTTATATCGGGTTATGTTACATtgacaaaaacactttaaagtgAGTGTTGCAGGCAAGGCAGTTTTGTCAGATATAACAAAGCGTCTTGAAACAAAGATCTGAAAGTCTTTTTGTCAGTTATTTCTATGTTCCAATTGGACTGACTTTAAGCAAACCAGTAGCTAATGCTGGTCTGAAGAAAAAAACTCTACAATTTGGCTAACAATTTTATCCAACCCAGCTGTCATCTAACAAAATAGTTGCATATggtagggaaaaaaaagcattgctaAGGAGATAAAGATAGTGGAGAACACAGCATAATGCAAATTACAGCACATGAACAAAGTAGGCAAAGGTTTGCAATACAATAAGCTTGAATTGCATGAAGCATGGAGTAGAATTAAGATTGAATTGAAGGACCTGTTTTTGATAATCTGTGAATGCATTTCTGTCCAATCATAAACCTTTGTTGTTTGGGAGATTGAGTgatataatataaacacaaaatacaaatctctgATGGTTGTGAAAGCTTCAActataaaacactgatttagtaattaaaattaaataaaccagttTAACTAGATATTGTAGCATATagtaattaagtatttaatataaataacaccactgtatatataaaataacttcaTATAATAgggattaaattatttaaatatttaaaacatattttctttgttttgatattCAAAATCaactaaagttttttttcaaGGTACAGTATTAGTACACAACTAAGTTATAGGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU98755 lncRNA upstream 457603 21073536 ~ 21074074 (+) True G79190
TU98738 lncRNA upstream 479101 21050816 ~ 21052576 (+) True G79178
TU98715 lncRNA upstream 531665 20988160 ~ 21000012 (+) True G79157
TU98670 lncRNA upstream 758596 20769999 ~ 20773081 (+) True G79118
TU98664 lncRNA upstream 873843 20657349 ~ 20657834 (+) True G79113
TU98862 lncRNA downstream 96561 21629158 ~ 21632876 (+) True G79272
TU98959 lncRNA downstream 469746 22002343 ~ 22002665 (+) True G79355
TU98961 lncRNA downstream 474794 22007391 ~ 22010144 (+) True G79357
TU98989 lncRNA downstream 512036 22044633 ~ 22045794 (+) True G79380
TU99005 lncRNA downstream 536826 22069423 ~ 22071493 (+) True G79394
AMCG00010257 mRNA upstream 1359 21529623 ~ 21530318 (+) True AMCG00010257
AMCG00010250 mRNA upstream 108777 21405183 ~ 21422900 (+) True AMCG00010250
AMCG00010252 mRNA upstream 426584 21081237 ~ 21105093 (+) True AMCG00010252
AMCG00010256 mRNA upstream 484200 21028778 ~ 21047477 (+) True AMCG00010256
AMCG00010251 mRNA upstream 508976 21004289 ~ 21022701 (+) True AMCG00010251
AMCG00010253 mRNA downstream 100808 21633405 ~ 21656223 (+) True AMCG00010253
AMCG00010255 mRNA downstream 202574 21735171 ~ 21740568 (+) True AMCG00010255
AMCG00010254 mRNA downstream 208177 21740774 ~ 21746219 (+) True AMCG00010254
AMCG00010259 mRNA downstream 214444 21747041 ~ 21756358 (+) True AMCG00010259
AMCG00010260 mRNA downstream 258932 21791529 ~ 21826339 (+) True AMCG00010260
TU98308 other upstream 2392030 19138003 ~ 19139647 (+) True AMCG00010216
TU98291 other upstream 2443923 19087329 ~ 19087754 (+) True G78794
TU98227 other upstream 2610233 18919911 ~ 18921444 (+) True G78743
TU97819 other upstream 4178189 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 4253679 17274387 ~ 17277998 (+) True G78396
TU98991 other downstream 513521 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 825372 22357969 ~ 22378809 (+) False G79420
TU99038 other downstream 825372 22357969 ~ 22378809 (+) False G79420
TU99122 other downstream 1167145 22699742 ~ 22703374 (+) True G79475
TU99126 other downstream 1167212 22699809 ~ 22703409 (+) False G79475

Expression Profile