RNA id: TU98862


Basic Information

Item Value
RNA id TU98862
length 1485
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G79272
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 21629158 ~ 21632876 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCCACTTTTAAATCTGTGTCAGTTGGAAAAGCGTGAGGGGAAgaagaaaatacttttcagaGCAGAAGGAAACTTAATTTCTTCCCCTAAACAGTGTGTATCGTCACCGCCATAAAAGATGGCTCATAAGCAAATATACTATTCTGACAAATACACAGATGAGTACTATGAATACAGgcATGTAATGCTACCGAAGGAGCTGGCAAAACAAGTACCCAAAACCCACCTAATGTCTGAAGATGAATGGAGGCGATTGGGAGTGCAGCAAAGTCTTGGATGGGTTCACTACATGATCCACGAGCCTGAGCCACATATCCTTTTGTTCAGAAGGCCTCTTCCAAAAGAATAACGTGGATTTCTGGAATCTTCAATTGAATCTTCTGGGACAATGTTCATTAAACTGGTATTCAGTGAATACTTGGGAGCGTACAAATTGTCAACTCCTGTGCACGAGCTGTATTCTTCACAGCAACAACGCTCAATCAACATACAGAGGACAAATATAAATTCTGCTTTGTAAATGTCgaaggggaggggggtatacaatttaaaagaaaatgtttgttttttttgtcagtgaaGCAAGTGCCTGATATTCGCTTTTTGTTCAAGTAggattataaatattttcaataaagtttGTTACATTAATTGTGTGAATATGTACCATTGCTGaatgggtttaaaaataaacatctaccCATGGTATGTGCCAAAATATTTACTTATCCaaatttttttacatttcttatgcATTTATATACCAGTTTATTGTAATCCGAGTTTAGAATTGTTCTCCTGCAAAGCACCCAAGATCattatgtaaatgaaaatagCCTTCTAgggtggtgtttttgttttttttcaccacCTTTTATTAGAAAGTGATATTCTGTCTGAAAATCTGGAACAAGCTTTATAAATGGGGGTATTGTACTTTGATCAGCATGATCAAATTCATAATATTCATTGGCAATTAATCATTCTACCCTGGATCATTTGTAATGGTTTGCTGGAATACATTGCATATTCATTATTTGATAGTTTACATTgttccaaaaaataaagaaattctGACATTGTGTATGAGATCTCAAAGTATTAGTCcttcaaaatgtgtacatagTTGTGAAGGTTTGCCAAAATATGACAGCCTGAAATGTTTATAGGATAACATTTGCTTAAGGATTTGATTGaagtatctttttattttttatgaaatgccCTACCTTTCACTTACAAAAATAGCCTTATGAAGTTGAATGCTTTGAGTCTACATTTTAATAGAATGTTGGTCAGATTACAGTTGAGCAATTTGTTTGCAACCTGGAATAAAAGTTGATGAAGTTGAGTGTATATCTGTACCAGACCTTCCGGTTTAATCAATGAACTGTGACAGTTAATGTtttatcaaaaatgtattagtgTTACAAAATGTAACGGAAGTATGTCATAGtatatatttactgtgtttCACATACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98849 lncRNA upstream 96561 21531677 ~ 21532597 (+) True G79259
TU98755 lncRNA upstream 555084 21073536 ~ 21074074 (+) True G79190
TU98738 lncRNA upstream 576582 21050816 ~ 21052576 (+) True G79178
TU98715 lncRNA upstream 629146 20988160 ~ 21000012 (+) True G79157
TU98670 lncRNA upstream 856077 20769999 ~ 20773081 (+) True G79118
TU98959 lncRNA downstream 369467 22002343 ~ 22002665 (+) True G79355
TU98961 lncRNA downstream 374515 22007391 ~ 22010144 (+) True G79357
TU98989 lncRNA downstream 411757 22044633 ~ 22045794 (+) True G79380
TU99005 lncRNA downstream 436547 22069423 ~ 22071493 (+) True G79394
TU99026 lncRNA downstream 602139 22235015 ~ 22235264 (+) True G79414
AMCG00010257 mRNA upstream 98840 21529623 ~ 21530318 (+) True AMCG00010257
AMCG00010250 mRNA upstream 206258 21405183 ~ 21422900 (+) True AMCG00010250
AMCG00010252 mRNA upstream 524065 21081237 ~ 21105093 (+) True AMCG00010252
AMCG00010256 mRNA upstream 581681 21028778 ~ 21047477 (+) True AMCG00010256
AMCG00010251 mRNA upstream 606457 21004289 ~ 21022701 (+) True AMCG00010251
AMCG00010253 mRNA downstream 529 21633405 ~ 21656223 (+) True AMCG00010253
AMCG00010255 mRNA downstream 102295 21735171 ~ 21740568 (+) True AMCG00010255
AMCG00010254 mRNA downstream 107898 21740774 ~ 21746219 (+) True AMCG00010254
AMCG00010259 mRNA downstream 114165 21747041 ~ 21756358 (+) True AMCG00010259
AMCG00010260 mRNA downstream 158653 21791529 ~ 21826339 (+) True AMCG00010260
TU98308 other upstream 2489511 19138003 ~ 19139647 (+) True AMCG00010216
TU98291 other upstream 2541404 19087329 ~ 19087754 (+) True G78794
TU98227 other upstream 2707714 18919911 ~ 18921444 (+) True G78743
TU97819 other upstream 4275670 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 4351160 17274387 ~ 17277998 (+) True G78396
TU98991 other downstream 413242 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 725093 22357969 ~ 22378809 (+) False G79420
TU99038 other downstream 725093 22357969 ~ 22378809 (+) False G79420
TU99122 other downstream 1066866 22699742 ~ 22703374 (+) True G79475
TU99126 other downstream 1066933 22699809 ~ 22703409 (+) False G79475

Expression Profile